PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021674307.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 363aa MW: 42129.9 Da PI: 8.2239

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021674307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	16	39	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C +Cg + s ks+ +Hi+t H XP_021674307.1 16 YFCDYCGICRSKKSLIASHIQTnH 39 78*******************999 PP
2	zf-C2H2	20.6	1.2e-06	61	82	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg sF+ + +Lk+H+++H XP_021674307.1 61 TCRECGASFKKPAYLKQHMQSH 82 6*******************99 PP
3	zf-C2H2	20.7	1.1e-06	88	112	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ +H XP_021674307.1 88 YVCSvdDCNASYRRKDHLTRHLLMH 112 99********************999 PP
4	zf-C2H2	12.5	0.00045	117	142	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ F + n krH r H XP_021674307.1 117 FKCPieNCNCEFVFQGNVKRHVRElH 142 89*********************988 PP
5	zf-C2H2	20.5	1.3e-06	156	180	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ +s L++H +H XP_021674307.1 156 YVCQetGCGKVFKYPSRLQKHKDSH 180 99*******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MEETAEIERL RPIRRYFCDY CGICRSKKSL IASHIQTNHK EELEKEKAHG DEEIEGVKSN 60 TCRECGASFK KPAYLKQHMQ SHSLVRPYVC SVDDCNASYR RKDHLTRHLL MHEGKLFKCP 120 IENCNCEFVF QGNVKRHVRE LHSENSPPAN VGQKQYVCQE TGCGKVFKYP SRLQKHKDSH 180 VELESVEAFC AELGCMKHFS NAQCLKAHIH SCHRYLTCEI CGTKQLKKNL KRHLRAHEAG 240 DQPVERIKCH FEDCCHTFSS KTNLNLHIKA VHLEDRPFAC GFLGCDMRFA FKHVRDNHEK 300 SGCHVYTPGD FEESDEQFRS RPRGGRKRKC PTVEMLVRKR VTPPTDLDEC HAWFQSVESH 360 EQS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MEETAEIERL RPIRRYFCDY CGICRSKKSL IASHIQTNHK EELEKEKAHG DEEIEGVKSN  60
TCRECGASFK KPAYLKQHMQ SHSLVRPYVC SVDDCNASYR RKDHLTRHLL MHEGKLFKCP  120
IENCNCEFVF QGNVKRHVRE LHSENSPPAN VGQKQYVCQE TGCGKVFKYP SRLQKHKDSH  180
VELESVEAFC AELGCMKHFS NAQCLKAHIH SCHRYLTCEI CGTKQLKKNL KRHLRAHEAG  240
DQPVERIKCH FEDCCHTFSS KTNLNLHIKA VHLEDRPFAC GFLGCDMRFA FKHVRDNHEK  300
SGCHVYTPGD FEESDEQFRS RPRGGRKRKC PTVEMLVRKR VTPPTDLDEC HAWFQSVESH  360
EQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	329	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-145	C2H2 family protein