PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021674599.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

LSD

Protein Properties

Length: 178aa MW: 18792.7 Da PI: 8.3249

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021674599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.1	3e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA +V+CalC+++ XP_021674599.1 7 CSGCRNILLYPRGAANVCCALCNAI 31 ***********************97 PP
2	zf-LSD1	39.3	1.1e-12	50	73	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C gCrt L+Y rGA+sVRC++C+t XP_021674599.1 50 CLGCRTWLMYSRGATSVRCSCCHT 73 99*********************9 PP
3	zf-LSD1	49.2	8.6e-16	88	112	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V XP_021674599.1 88 CGNCRTTLMYPYGAPSVKCAICQYV 112 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MQSQLQCSGC RNILLYPRGA ANVCCALCNA ITSAPPPPPP LGMEMAQLIC LGCRTWLMYS 60 RGATSVRCSC CHTTNPAPVS SQVAHINCGN CRTTLMYPYG APSVKCAICQ YVSNVSMANV 120 RVPLPANRPN GATGMIPSTS TSTPHSQTQT VVVENPMSVD ESGNLVSNVV VGVTTERK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-61	LSD family protein