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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_021677492.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 289aa MW: 31915.6 Da PI: 5.6136 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 59.6 | 6.9e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v +ifdfl +iv +
XP_021677492.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYAITLKRGAKTLNSLHLKQCVHTFNIFDFLREIVGK 86
5789************************************************************************99865 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YAITLKRGAK 60 TLNSLHLKQC VHTFNIFDFL REIVGKVPDL GGSDSAGDDH SVAKRRKVID DEDNDCDEDL 120 SRSKMHETAH TSGSGRGRGR GRGRGRGRGR GRGRGSRAVE RETVAQCGKF EDDADISHHD 180 DNHSPTIERL DNVDEPEALK ENILAAGKST QAPVHDFDLN VGLDENGESK TVLTSAPTSL 240 TAKPTPVTKH EELPGWSLAD IEKMDINPIH LANIDRSIVE DMEDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| 2 | 136 | 146 | RGRGRGRGRGR |
| 3 | 138 | 147 | RGRGRGRGRG |
| 4 | 138 | 148 | RGRGRGRGRGR |
| 5 | 140 | 149 | RGRGRGRGRG |
| 6 | 140 | 150 | RGRGRGRGRGR |
| 7 | 142 | 151 | RGRGRGRGRG |
| 8 | 142 | 152 | RGRGRGRGRGR |
| 9 | 144 | 153 | RGRGRGRGRG |
| 10 | 144 | 154 | RGRGRGRGRGR |
| 11 | 146 | 155 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G19490.1 | 1e-61 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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