PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021679538.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 481aa MW: 50998.9 Da PI: 8.4472

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021679538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.5e-12	50	74	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_021679538.1 50 EADCIYYLRTGFCGYGARCRFNHPR 74 689********************96 PP
2	zf-CCCH	37.4	4.1e-12	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_021679538.1 96 QPVCQYYMRTGMCKFGASCKYHHPK 120 689********************96 PP
3	zf-CCCH	34.3	3.9e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ XP_021679538.1 141 GERECTYYVKTGHCKFGATCKFHHPQ 166 789*********************97 PP
4	zf-CCCH	38.7	1.7e-12	306	332	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_021679538.1 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332 5789*********************97 PP
5	zf-CCCH	28.3	3e-09	355	378	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G+Ck+G+ CkF H++ XP_021679538.1 355 PTCTHYTQRGQCKFGPACKFDHPM 378 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MDRYGRTQEG SQSDPSPEWT APGPETGFEE GVWQLGLGER ESGYPERPNE ADCIYYLRTG 60 FCGYGARCRF NHPRDRGAVI GATRAGAGEF PERVGQPVCQ YYMRTGMCKF GASCKYHHPK 120 QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGHCKFGATC KFHHPQPANL QIPAQSVAPQ 180 VAPLPPPVAA STLYPTVQSP SVPSTQQYGI VVARPSLLPG SYVQGPYGPM VLSPGVVSYP 240 SWSSYPAPVS PVASHSTQPG VVSGSVYGIT QLSPSASAYT GIYQPISTSI GPSSSSQKEH 300 SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPL RPGAPTCTHY 360 TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYAV GSSIGTLAPS SSSSELRPEL 420 LSGSSKDSSS TRMSSSSSTS SVLVGSTFSK SGPVPYSSVQ QSSQSSGHST GSSSKEAHTS 480 S

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MDRYGRTQEG SQSDPSPEWT APGPETGFEE GVWQLGLGER ESGYPERPNE ADCIYYLRTG  60
FCGYGARCRF NHPRDRGAVI GATRAGAGEF PERVGQPVCQ YYMRTGMCKF GASCKYHHPK  120
QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGHCKFGATC KFHHPQPANL QIPAQSVAPQ  180
VAPLPPPVAA STLYPTVQSP SVPSTQQYGI VVARPSLLPG SYVQGPYGPM VLSPGVVSYP  240
SWSSYPAPVS PVASHSTQPG VVSGSVYGIT QLSPSASAYT GIYQPISTSI GPSSSSQKEH  300
SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPL RPGAPTCTHY  360
TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYAV GSSIGTLAPS SSSSELRPEL  420
LSGSSKDSSS TRMSSSSSTS SVLVGSTFSK SGPVPYSSVQ QSSQSSGHST GSSSKEAHTS  480
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-146	C3H family protein