PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021680878.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

AP2

Protein Properties

Length: 579aa MW: 64444.8 Da PI: 7.6171

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021680878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49	1.6e-15	260	319	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021680878.1 260 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 319 78*****************655454478446***********************98 PP
2	AP2	46.7	7.6e-15	363	413	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_021680878.1 363 AYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413 69*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MSKRLGFSLS PHLRIDEGFG RDEQGGFSSH HDVSVMPLRS DGSLCFVDPF RRSSNASQDW 60 RYENSMDGTS ASEEGPKLED FLGCYSNSPS DETKVYCQDD QTQNHSNRIN VNVAPSFNTG 120 GDIDTRDNLT NPPNLIQSYH HYNENPQTLI PSDNLQHFDP NPSHSHNNSM YRLPFENGSS 180 VSGFKSWLRQ APYCSDKSSS EASNCNFQPL SLTMSPSSQN ALAAVSPMQV FDNRKRPVGK 240 SLARESIPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY 300 DKEEKAARAY DLAALKYWGP TTHINFPLST YEKELEEMKH LTRQEFVANL RRKSSGFSRG 360 ASAYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF 420 DISRYDVKRI CSSSTLIAGD LAKRSPKDLA PVALEDDNSC ASSTSPQRLL AVTSGEATDE 480 LADMVWNKNA DENQQQKRAN NVNNDVTALL ASSRRNSSNP VSPKCSVGLG SEFGTGGGDY 540 TQAYSLQGAK YEDGNNASND RIGSLGLVHQ VPMFALWNE

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MSKRLGFSLS PHLRIDEGFG RDEQGGFSSH HDVSVMPLRS DGSLCFVDPF RRSSNASQDW  60
RYENSMDGTS ASEEGPKLED FLGCYSNSPS DETKVYCQDD QTQNHSNRIN VNVAPSFNTG  120
GDIDTRDNLT NPPNLIQSYH HYNENPQTLI PSDNLQHFDP NPSHSHNNSM YRLPFENGSS  180
VSGFKSWLRQ APYCSDKSSS EASNCNFQPL SLTMSPSSQN ALAAVSPMQV FDNRKRPVGK  240
SLARESIPRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY  300
DKEEKAARAY DLAALKYWGP TTHINFPLST YEKELEEMKH LTRQEFVANL RRKSSGFSRG  360
ASAYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF  420
DISRYDVKRI CSSSTLIAGD LAKRSPKDLA PVALEDDNSC ASSTSPQRLL AVTSGEATDE  480
LADMVWNKNA DENQQQKRAN NVNNDVTALL ASSRRNSSNP VSPKCSVGLG SEFGTGGGDY  540
TQAYSLQGAK YEDGNNASND RIGSLGLVHQ VPMFALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-142	AP2 family protein