PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021682161.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 519aa MW: 56377.9 Da PI: 8.6333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021682161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.2e-06	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021682161.1 93 FVCEICNKGFQREQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	13.2	0.00026	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_021682161.1 169 WKCDKCSKKYAVQSDWKAHTKTC 191 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MSNITGEGGS FSSGNTAAVG DVEVQQQELL NHLNSIASST TTTTTTTTTN GSTTQQHQPI 60 TVFKKKRNLP GNPDPSAEVI ALSPNTLVAT NRFVCEICNK GFQREQNLQL HRRGHNLPWK 120 LRQRTSTEIK KRVYVCPEPS CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV 180 QSDWKAHTKT CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL TEENNKANQG LVPNMEPNLH 240 GQVPNLISMP INNNSDFNHL DTKIPLSLPH ELMPMPPKPS GTMFSSSSNA SLFGCGRSMS 300 NSSSSLQLSA NSSTIFEGNN GHLTTGSSAS MSATALLQKA AQMGATATSS SLNSPMSHKS 360 FVTNMAPSTF GPMQTSDDQS QMTAAGGNGG FINQFFNTNS GVIESSAAND MAMFNEVFDQ 420 NSALFKNIEQ GSSNNKNFFH GVNSNHPSGA NNPSGLTSFS GDVMTVDFLG VGGSRQRNLH 480 EQQKQEMEFR GIGHPRIHQG LGHFEQQAAA ALEKPMWDV

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MSNITGEGGS FSSGNTAAVG DVEVQQQELL NHLNSIASST TTTTTTTTTN GSTTQQHQPI  60
TVFKKKRNLP GNPDPSAEVI ALSPNTLVAT NRFVCEICNK GFQREQNLQL HRRGHNLPWK  120
LRQRTSTEIK KRVYVCPEPS CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV  180
QSDWKAHTKT CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL TEENNKANQG LVPNMEPNLH  240
GQVPNLISMP INNNSDFNHL DTKIPLSLPH ELMPMPPKPS GTMFSSSSNA SLFGCGRSMS  300
NSSSSLQLSA NSSTIFEGNN GHLTTGSSAS MSATALLQKA AQMGATATSS SLNSPMSHKS  360
FVTNMAPSTF GPMQTSDDQS QMTAAGGNGG FINQFFNTNS GVIESSAAND MAMFNEVFDQ  420
NSALFKNIEQ GSSNNKNFFH GVNSNHPSGA NNPSGLTSFS GDVMTVDFLG VGGSRQRNLH  480
EQQKQEMEFR GIGHPRIHQG LGHFEQQAAA ALEKPMWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	7e-98	C2H2 family protein