PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021684874.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C2H2

Protein Properties

Length: 545aa MW: 58539.4 Da PI: 9.0476

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021684874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021684874.1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	13.8	0.00017	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_021684874.1 164 WKCDKCSKRYAVQSDWKAHTKTC 186 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MMKGLMFHQQ NQPQEESMSN LTSASGEASV SSGNRNETCT NYPPQQYVAP PAPQIQPVKK 60 KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT 120 NKEVRKKVYV CPESSCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KRYAVQSDWK 180 AHTKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESG RAIAGAPNSV LHSAQPAPGS 240 STSHNINLQM PQFNATSTQG LHAFSLKKEL QSFSLRPELP PWLACPPGLG AGAGPGPPHH 300 WQIPVDHLSS SSSLILTHHQ ELSPNPNPSL GPALPHYHAA PSPHVSATAL LQKATQMGAT 360 ISGKTAGLMR PHHYQHDEQA HVSSNSSNND ANTTGFGLNL SSHKELPGGW SFVDGLQAPF 420 GNKAGLAVPS GSTTAGASGA PSGALIQEMM NSLSSSSGFE GTNSFEDAFV SGVLNTKKGG 480 NFHDSLSKAT TNDNGGGSGG GAGEGLTRDF LGLRAFSHSD ILSMAGLGNC VNVSYEQHKQ 540 SRSHS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MMKGLMFHQQ NQPQEESMSN LTSASGEASV SSGNRNETCT NYPPQQYVAP PAPQIQPVKK  60
KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
NKEVRKKVYV CPESSCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KRYAVQSDWK  180
AHTKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESG RAIAGAPNSV LHSAQPAPGS  240
STSHNINLQM PQFNATSTQG LHAFSLKKEL QSFSLRPELP PWLACPPGLG AGAGPGPPHH  300
WQIPVDHLSS SSSLILTHHQ ELSPNPNPSL GPALPHYHAA PSPHVSATAL LQKATQMGAT  360
ISGKTAGLMR PHHYQHDEQA HVSSNSSNND ANTTGFGLNL SSHKELPGGW SFVDGLQAPF  420
GNKAGLAVPS GSTTAGASGA PSGALIQEMM NSLSSSSGFE GTNSFEDAFV SGVLNTKKGG  480
NFHDSLSKAT TNDNGGGSGG GAGEGLTRDF LGLRAFSHSD ILSMAGLGNC VNVSYEQHKQ  540
SRSHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-125	C2H2 family protein