PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021686227.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27544.9 Da    PI: 9.5005
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021686227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_021686227.1  9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
                    79***********************************************96 PP
2K-box71.33e-2485178997
           K-box   9 leeakaeslqqelakLkkeienLq.....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++++ ++++++   L k+ie L+     +  R+llG++Le++s+ eLqqLe+qLe+sl++iR++Kn+l++e+ie+l++ ek l eenk+L++k
  XP_021686227.1  85 TSQENLQNMKEDTFSLAKKIELLEvskflEICRKLLGDGLEPCSIDELQQLESQLERSLTRIRTRKNQLFTEKIEKLREEEKILMEENKRLQAK 178
                     68899*******************99888778***********************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSC  60
RFFSINKTIE RYQKKAKDLG ISIKTSQENL QNMKEDTFSL AKKIELLEVS KFLEICRKLL  120
GDGLEPCSID ELQQLESQLE RSLTRIRTRK NQLFTEKIEK LREEEKILME ENKRLQAKCG  180
LQPMDLSTTT IKEQHVADRQ SMEVETELFI GPQIANRKNM EVGTELFIGP PETRTSFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.18e-63MIKC_MADS family protein