PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021686557.1
Organism
Hevea brasiliensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27182.2 Da    PI: 9.4597
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021686557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-312373151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  XP_021686557.1 23 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYCN 73
                    79***********************************************95 PP
2K-box109.63.4e-36901873100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s+++s +e +a+++qqe+akL+++i++Lq+++Rhl+G++L+sL++keL+qLe++Le+++++iRskK+elll++ie+lqk+e el++e  +Lr+k
  XP_021686557.1  90 SSNTSSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVCLRTK 184
                     455566999************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_021686557.1 185 IAE 187
                     986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MAYIHLFYVS FEVGMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI  60
VFSSRGRLYE YCNNNIKSTI ERYKKACSDS SNTSSITEIN AQYYQQESAK LRQQIQMLQN  120
SNRHLMGDSL SSLTVKELKQ LENRLERGIT RIRSKKHELL LAEIEYLQKR EIELENESVC  180
LRTKIAEIER LQQANMVTGA ELNAIQALTS RNFFGPHMIE GGTAYSHPDK KILHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-124MIKC_MADS family protein