PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021686828.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

HD-ZIP

Protein Properties

Length: 378aa MW: 42519.5 Da PI: 4.9655

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021686828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.5	8.5e-22	82	137	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_021686828.1 82 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 137 7999************************************************9877 PP
2	START	58.9	1.6e-19	250	360	2	93
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 + ++a++el+k+a+a+ep+W +s+ e++n+de++++f +++ +s+ea+r++gv + +l++lv+++ d + qW+e+++ ka+t+ XP_021686828.1 250 IVNQAMEELMKMATAGEPLWIRSVetgrEILNYDEYMKEFGVENSssgrpkRSIEASRETGVAFVDLPRLVQIFNDAN-QWKEMFPclisKAATV 343 56789*********************************6666699*************************99.************ PP EEECTT......EEEEE CS START 83 evissg......galql 93 +vis+g ga+ql XP_021686828.1 344 DVISNGegpnknGAVQL 360 ****99999988887 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MNAGIFRSAN ADGAAEASEM EVEEGEEGSG GERGRREGTV EISSENSGPM RSRSDDEFEG 60 EGEHDDDDDA VAGDDKNKKK KRKKYHRHTA EQIREMEALF KESPHPDEKQ RQQLSKQLGL 120 APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT EMEKLREENK AMRETINKAC CPNCGMATTS 180 RDSSLTTEEQ QLRIENAKLK AEVEKLRAAL GNSPSGAAPS CSAGNEQENR SSLDFYTGIF 240 GLEKSRIMEI VNQAMEELMK MATAGEPLWI RSVETGREIL NYDEYMKEFG VENSSSGRPK 300 RSIEASRETG VAFVDLPRLV QIFNDANQWK EMFPCLISKA ATVDVISNGE GPNKNGAVQL 360 VSCIFGCLMQ QFFFIFNY

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MNAGIFRSAN ADGAAEASEM EVEEGEEGSG GERGRREGTV EISSENSGPM RSRSDDEFEG  60
EGEHDDDDDA VAGDDKNKKK KRKKYHRHTA EQIREMEALF KESPHPDEKQ RQQLSKQLGL  120
APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT EMEKLREENK AMRETINKAC CPNCGMATTS  180
RDSSLTTEEQ QLRIENAKLK AEVEKLRAAL GNSPSGAAPS CSAGNEQENR SSLDFYTGIF  240
GLEKSRIMEI VNQAMEELMK MATAGEPLWI RSVETGREIL NYDEYMKEFG VENSSSGRPK  300
RSIEASRETG VAFVDLPRLV QIFNDANQWK EMFPCLISKA ATVDVISNGE GPNKNGAVQL  360
VSCIFGCLMQ QFFFIFNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	KKKKRK
2	78	84	KKKKRKK
3	80	84	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	1e-122	HD-ZIP family protein