PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021690996.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 495aa MW: 55492.2 Da PI: 5.6599

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021690996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.3e-13	149	171	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G++CkF+H+ XP_021690996.1 149 EDCAFYMKTGTCKFGSNCKFNHP 171 89********************9 PP
2	zf-CCCH	32.4	1.5e-10	195	219	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG CkyG C+++H++ XP_021690996.1 195 QTECKYYLRTGGCKYGKACRYNHSR 219 578********************95 PP
3	zf-CCCH	39.5	9.1e-13	247	271	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG +C+F+H+ XP_021690996.1 247 GERECPYYMRNGSCKYGVNCRFNHP 271 5799********************9 PP
4	zf-CCCH	24.6	4.3e-08	381	407	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+ ++Ck++H++ XP_021690996.1 381 PGQPECSYYLKTGGCKFKSNCKYHHPK 407 5789*********************96 PP
5	zf-CCCH	32.9	1.1e-10	431	452	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++r+G+Ck+G+ CkF H+ XP_021690996.1 431 ICSYYSRYGICKFGPACKFDHS 452 7********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MEYSEASNFL TNTADTNPKL GFQSSSNADS DSDQTLELRK KLERKPLYLT EAGVVFEEAA 60 PDIAVVEKVY EKLEKQLHLK EDEEDKHSIE WNQDDYFNSV ESIDGEEHNR YDKEDNDNND 120 EKLDDEAEEK NESINGNRRH QYPVRPEAED CAFYMKTGTC KFGSNCKFNH PVRRKSQATK 180 EKVKEREEAA ERSDQTECKY YLRTGGCKYG KACRYNHSRA KTPVLPAKTT VFPVLELNFL 240 GLPIRLGERE CPYYMRNGSC KYGVNCRFNH PDPTAAGGSD PPSAFSNGGA AALQSSSQSS 300 VASWSLPRGL NEAAPFPIMF SPTQGVPSQN PEWNGYQAPA FPPERRSIHP GSAYVISNPA 360 TDTNVYAHQQ QMTFDEYPER PGQPECSYYL KTGGCKFKSN CKYHHPKNQI PKSPPCALSD 420 KGLPLRPGQH ICSYYSRYGI CKFGPACKFD HSIQPASMTG SAEDQGTPFS DSLAKDESRM 480 SETGNQSDTA IQQPE

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MEYSEASNFL TNTADTNPKL GFQSSSNADS DSDQTLELRK KLERKPLYLT EAGVVFEEAA  60
PDIAVVEKVY EKLEKQLHLK EDEEDKHSIE WNQDDYFNSV ESIDGEEHNR YDKEDNDNND  120
EKLDDEAEEK NESINGNRRH QYPVRPEAED CAFYMKTGTC KFGSNCKFNH PVRRKSQATK  180
EKVKEREEAA ERSDQTECKY YLRTGGCKYG KACRYNHSRA KTPVLPAKTT VFPVLELNFL  240
GLPIRLGERE CPYYMRNGSC KYGVNCRFNH PDPTAAGGSD PPSAFSNGGA AALQSSSQSS  300
VASWSLPRGL NEAAPFPIMF SPTQGVPSQN PEWNGYQAPA FPPERRSIHP GSAYVISNPA  360
TDTNVYAHQQ QMTFDEYPER PGQPECSYYL KTGGCKFKSN CKYHHPKNQI PKSPPCALSD  420
KGLPLRPGQH ICSYYSRYGI CKFGPACKFD HSIQPASMTG SAEDQGTPFS DSLAKDESRM  480
SETGNQSDTA IQQPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-127	C3H family protein