PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022132271.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 545aa MW: 59322.4 Da PI: 6.8876

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022132271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.3e-23	104	205	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +a+++ ++ + tl+++d +g +W++++i+r++++r++lt+GW++Fv+ ++L +gD+vvF ++s XP_022132271.1 104 FAKILTSSDANNGGGFSVPRFCADSIfpplnylADPPVQ--TLSITDVHGVVWNFRHIFRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFA--KNS 194 89*******************999*98666666..8********************************************..779 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ ++v+++r+ XP_022132271.1 195 RGDMFVGIRRA 205 9999***97 PP
2	Auxin_resp	92	9.8e-31	257	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++ +FevvY+Pra++seFvvk+e v kal+ +s G R+kma++tedss++++ +Gtv++vs + W+nS+Wr+L+ XP_022132271.1 257 AAELAAQFRPFEVVYYPRAGWSEFVVKAETVDKALSYYWSSGLRVKMAVDTEDSSKTTWyQGTVTSVSIPEHGPWRNSPWRMLQ 340 67889999*************************************************9********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MDPKLWRAFA GNSVQIHTVG SQVYYFTQGH VEQSSSAPCL SRSVLSNPAT KCLVTAAHFN 60 ADPLTDEVCI KLNLHPFGHG GEVPVLPLAG SDDNGGEGDR VVSFAKILTS SDANNGGGFS 120 VPRFCADSIF PPLNYLADPP VQTLSITDVH GVVWNFRHIF RGTPRRHLLT TGWSKFVNNK 180 KLVAGDSVVF AKNSRGDMFV GIRRATKGNT GGDCGRWHSQ IGGVRYSAEE NRSGEGGREV 240 FSRNGIGKLP AEAVANAAEL AAQFRPFEVV YYPRAGWSEF VVKAETVDKA LSYYWSSGLR 300 VKMAVDTEDS SKTTWYQGTV TSVSIPEHGP WRNSPWRMLQ VTWDETDALL SAKGVNPWEV 360 EFATAAAPVQ PTVHQAKKFR GLQKSGQLTG EEELFSPMMR FGDSSTVEQF NQSLLSFNSF 420 PAGMQGARQN LFCESRLSNS YKEITSLTCD DNSMCKMNVV PKKQMVSTDL LIGSVQSDTL 480 SPDSQASVLS FAAEATENQC CNSTKSGVRS FQLFGQVIYT NLPAENGLNS GVSTNDGDKN 540 PNQST

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MDPKLWRAFA GNSVQIHTVG SQVYYFTQGH VEQSSSAPCL SRSVLSNPAT KCLVTAAHFN  60
ADPLTDEVCI KLNLHPFGHG GEVPVLPLAG SDDNGGEGDR VVSFAKILTS SDANNGGGFS  120
VPRFCADSIF PPLNYLADPP VQTLSITDVH GVVWNFRHIF RGTPRRHLLT TGWSKFVNNK  180
KLVAGDSVVF AKNSRGDMFV GIRRATKGNT GGDCGRWHSQ IGGVRYSAEE NRSGEGGREV  240
FSRNGIGKLP AEAVANAAEL AAQFRPFEVV YYPRAGWSEF VVKAETVDKA LSYYWSSGLR  300
VKMAVDTEDS SKTTWYQGTV TSVSIPEHGP WRNSPWRMLQ VTWDETDALL SAKGVNPWEV  360
EFATAAAPVQ PTVHQAKKFR GLQKSGQLTG EEELFSPMMR FGDSSTVEQF NQSLLSFNSF  420
PAGMQGARQN LFCESRLSNS YKEITSLTCD DNSMCKMNVV PKKQMVSTDL LIGSVQSDTL  480
SPDSQASVLS FAAEATENQC CNSTKSGVRS FQLFGQVIYT NLPAENGLNS GVSTNDGDKN  540
PNQST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-142	ARF family protein