PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022132879.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 233aa    MW: 25714 Da    PI: 8.338
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022132879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.41.5e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++      ++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_022132879.1   2 SCNGCRVLRKGCSESCILRPCLqwidtSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_022132879.1  97 AVETVLR 103
                     *998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIDTSE AQGHATVFVA KFFGRAGLMS FISAVPQSQR  60
PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM NEFLAGGGSP  120
SDETSSEAEV ACTDMWKLRD SYPNSRFSNS RSRLSPKRKR SDQESTTKQQ LNDLDLRLTP  180
IFPAKSTRRA GTPSMNSEES ETTTCFESGL GDHHHHQYPQ PEGGQRKLLN LFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-81LBD family protein