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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_022133113.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 228aa MW: 26407 Da PI: 9.9202 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 61.9 | 9.5e-20 | 69 | 122 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq+e Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
XP_022133113.1 69 KRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 122
5689************************************************95 PP
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| 2 | HD-ZIP_I/II | 116.3 | 1.8e-37 | 68 | 159 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+l +y++Lk+a+d+l+ ++++L++++ +L+eel+e
XP_022133113.1 68 KKRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLQDEYSTLKKAHDSLVLDKSHLQSQMMKLKEELME 159
9***************************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 228 aa Download sequence |
MAAVNLRPQP DNNAILISQL YNHAEIHSRV LPQPQPQPQP QPGAVAAEGN KAGRRRRRKS 60 KGKEGGLKKR KLSREQVELL EMNFGNEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW 120 KNKKLQDEYS TLKKAHDSLV LDKSHLQSQM MKLKEELMEA KREIKQLVER SEGISSNSRS 180 SSVTMDLEGA QPPFLGELFV EGYEDVFYYM QMQDNNYTQG IDWLNLYM |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 54 | 71 | RRRRRKSKGKEGGLKKRK |
| 2 | 55 | 72 | RRRRKSKGKEGGLKKRKL |
| 3 | 55 | 72 | RRRRRKSKGKEGGLKKRK |
| 4 | 56 | 61 | RRRKSK |
| 5 | 56 | 73 | RRRRKSKGKEGGLKKRKL |
| 6 | 56 | 73 | RRRRRKSKGKEGGLKKRK |
| 7 | 57 | 74 | RRRRKSKGKEGGLKKRKL |
| 8 | 57 | 74 | RRRRRKSKGKEGGLKKRK |
| 9 | 58 | 75 | RRRRKSKGKEGGLKKRKL |
| 10 | 118 | 126 | ARWKNKKLQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 2e-49 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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