PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022133114.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25731.3 Da    PI: 9.9202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022133114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-2063116457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq+e Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_022133114.1  63 KRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 116
                     5689************************************************95 PP
2HD-ZIP_I/II116.41.7e-3762153293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+l  +y++Lk+a+d+l+ ++++L++++ +L+eel+e
  XP_022133114.1  62 KKRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLQDEYSTLKKAHDSLVLDKSHLQSQMMKLKEELME 153
                     9***************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MAAVNLRPQP DNNAILISQL YNHAEIHSRV LPQPQPGAVA AEGNKAGRRR RRKSKGKEGG  60
LKKRKLSREQ VELLEMNFGN EHKLESERKD RLASELGLDP RQVAVWFQNR RARWKNKKLQ  120
DEYSTLKKAH DSLVLDKSHL QSQMMKLKEE LMEAKREIKQ LVERSEGISS NSRSSSVTMD  180
LEGAQPPFLG ELFVEGYEDV FYYMQMQDNN YTQGIDWLNL YM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14865RRRRRKSKGKEGGLKKRK
24966RRRRKSKGKEGGLKKRKL
34966RRRRRKSKGKEGGLKKRK
45055RRRKSK
55067RRRRKSKGKEGGLKKRKL
65067RRRRRKSKGKEGGLKKRK
75168RRRRKSKGKEGGLKKRKL
85168RRRRRKSKGKEGGLKKRK
95269RRRRKSKGKEGGLKKRKL
10112120ARWKNKKLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-50HD-ZIP family protein