PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022133188.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 491aa    MW: 55969.2 Da    PI: 4.7929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022133188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2453e-751204812373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lLl++Aeav+++++ l++ l+++l++l    +g +p++Rla +ft++L+ + +     l + +pp+e ++++ +++++a+++++e+sP++kf+
  XP_022133188.1 120 TDLLLAAAEAVEAQNQPLVSVLIEKLKNLlLCDSGsSPFNRLAWFFTQGLHYKST-----LTNFFPPREMADQEKKNSISAFQMLQELSPYIKFA 209
                     689*************************984455559*************97655.....58899****************************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea++gee++H+iDfdi++G+QWp+L+  La++ ++   lR+T+v++ ++++++++e+tg+rL++fA++++ pfef+ +  ++ e++
  XP_022133188.1 210 HFTANQAILEAAQGEEALHVIDFDIMEGIQWPPLMADLAAK-KDFSLLRLTAVVQ-DHENETKIEQTGRRLSEFAKSINFPFEFDHMRIEKAENF 302
                     ****************************************8.56689********.7789*************************9744444444 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsl.eaklpres 279
                          +++ g a++ n++  lh++l  s+s  s+ +++L+   +lsPk vv+ve+e   ++  +  sF+e f+ea++++sal dsl     ++ +
  XP_022133188.1 303 --G--KIQVGQAVIANCSGILHHIL--SHSNISKLETFLSGAAKLSPKCVVLVEEElfkVSKpQPMSFVEFFFEAFHHFSALSDSLlRCFCGAYE 391
                     ..3..445699**************..77777779*********************64433335559*******************888888888 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  + vE++ lg +i + v +   + + r+   +   + l+  G+k++p+s+++ +qak+l++ + +d + v++e+  l l+Wk+rpL +++ W
  XP_022133188.1 392 SGFRQVEEF-LGARILESVRQFPCDDNVRNLLSNGFDHYLK--GYKKIPFSSFNRCQAKYLVSLFRGD-FWVQHEKCRLSLCWKSRPLCTATIW 481
                     999999999.**********999998888887777777765..***********************88.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MELEPIEFLT NYSYFPAETF IQTHEFAEHS HGNSSCYSHS ENNSSQNSLQ DGSFLEYGDQ  60
DLIFLEEALE FDPTNYNPDF LSTSTDQNPA EMDSWIQPNE KDGSFFEGIQ AELMEEESLT  120
DLLLAAAEAV EAQNQPLVSV LIEKLKNLLL CDSGSSPFNR LAWFFTQGLH YKSTLTNFFP  180
PREMADQEKK NSISAFQMLQ ELSPYIKFAH FTANQAILEA AQGEEALHVI DFDIMEGIQW  240
PPLMADLAAK KDFSLLRLTA VVQDHENETK IEQTGRRLSE FAKSINFPFE FDHMRIEKAE  300
NFGKIQVGQA VIANCSGILH HILSHSNISK LETFLSGAAK LSPKCVVLVE EELFKVSKPQ  360
PMSFVEFFFE AFHHFSALSD SLLRCFCGAY ESGFRQVEEF LGARILESVR QFPCDDNVRN  420
LLSNGFDHYL KGYKKIPFSS FNRCQAKYLV SLFRGDFWVQ HEKCRLSLCW KSRPLCTATI  480
WVPRVKSGAK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-42GRAS family protein