PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134017.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 686aa MW: 75385.9 Da PI: 6.8835

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.3e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_022134017.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfppldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 212 89**************************986445444..8999*****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+v+r+ XP_022134017.1 213 TGDLCVGVRRA 223 9999**996 PP
2	Auxin_resp	104.6	1.2e-34	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+P a+t+eFvvk++ v++al++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWpnS+WrsL+ XP_022134017.1 281 AAMLAASTKPFEVVYYPCAGTPEFVVKASTVKSALDHHWGSGMRFKMPFETEDSSRISWfMGTISYVQVADPIRWPNSPWRSLQ 364 56788999**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MNRGLDSVIE SMRNPEKCLD SQLWHACAGG MVQLPSINSK VVYFPQGHAE HAQGNVDFGN 60 SRIPSIILCR VSGIRHMADP ETDEVFAKIR LIPVRKDEFD VEDNDELLGH REIRSQEKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPP LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG 180 TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLCVGV RRAKKGIGCG IDYSPGWNPT 240 NSGSPLVGYS DFMRENEGRL VRRNPNGNLS GRVKVESVIQ AAMLAASTKP FEVVYYPCAG 300 TPEFVVKAST VKSALDHHWG SGMRFKMPFE TEDSSRISWF MGTISYVQVA DPIRWPNSPW 360 RSLQVTWDEP DLLQNVKSVN PWSVEVVVNM PAIHVSPFSP PRKKPRFPLP ADTAVFGHLP 420 MPSFSTNFFE STNPLLGITN NNIPAGIQGA RHTQFGLSSS NLQISRPQSG QFPIGFKHLD 480 GATPLPGIHG EDIFGGTKNP DNLSHWLTMG NHIQSPKEIK ETKPAHILLF GQLILPDQQI 540 SKSCSGDTTN ASDANLEKAS NLSDGSGSSS QQNGSLENSS DGGSTSYNGQ EKTGLGLDTG 600 HCKVFMELEN VGRTLDLSVL GSYEELYRKL ANMFGVGSSE MLSSVLYQDA LGATRHAGDE 660 PFSEFLKTAR RLTVHADSRS SDDIRM

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MNRGLDSVIE SMRNPEKCLD SQLWHACAGG MVQLPSINSK VVYFPQGHAE HAQGNVDFGN  60
SRIPSIILCR VSGIRHMADP ETDEVFAKIR LIPVRKDEFD VEDNDELLGH REIRSQEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPP LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLCVGV RRAKKGIGCG IDYSPGWNPT  240
NSGSPLVGYS DFMRENEGRL VRRNPNGNLS GRVKVESVIQ AAMLAASTKP FEVVYYPCAG  300
TPEFVVKAST VKSALDHHWG SGMRFKMPFE TEDSSRISWF MGTISYVQVA DPIRWPNSPW  360
RSLQVTWDEP DLLQNVKSVN PWSVEVVVNM PAIHVSPFSP PRKKPRFPLP ADTAVFGHLP  420
MPSFSTNFFE STNPLLGITN NNIPAGIQGA RHTQFGLSSS NLQISRPQSG QFPIGFKHLD  480
GATPLPGIHG EDIFGGTKNP DNLSHWLTMG NHIQSPKEIK ETKPAHILLF GQLILPDQQI  540
SKSCSGDTTN ASDANLEKAS NLSDGSGSSS QQNGSLENSS DGGSTSYNGQ EKTGLGLDTG  600
HCKVFMELEN VGRTLDLSVL GSYEELYRKL ANMFGVGSSE MLSSVLYQDA LGATRHAGDE  660
PFSEFLKTAR RLTVHADSRS SDDIRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein