PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134166.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 300aa MW: 33660 Da PI: 6.5673

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.3	1.2e-13	232	256	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg XP_022134166.1 232 KTELCNKWRETGGCPYGDHCRFAHG 256 8***********************9 PP
2	zf-CCCH	18.2	4.5e-06	269	294	1	26
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykt Cr ++ G tC+yG rC+F H+ XP_022134166.1 269 YKTQMCRMVLA-GdTCPYGHRCHFRHS 294 899******.55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MAVVFENFFS AWVPMEEEDM SPPLPSSLPA TPPEFENFGV HFASMYHSIF PPLSTLSLPS 60 SLSFTPSPCS SAVDDDDHSH SHTDELLFEA GLVLESRELW EQHDLCLRRL REVSKEADYL 120 RRENAQIRSA NAELVKLVSS KIGVDDIISP TSVIRNNNNQ FEGMIRNRRR VIALPNSISV 180 RSATPATAPL LNIQSRRVCA PASGGGGSGK REEEEAAAAA MELELYNQGM AKTELCNKWR 240 ETGGCPYGDH CRFAHGVEEL RPVIRHPRYK TQMCRMVLAG DTCPYGHRCH FRHSLNHRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	7e-57	C3H family protein