PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134192.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

NF-X1

Protein Properties

Length: 870aa MW: 97351.2 Da PI: 8.4101

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	24	8.5e-08	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+HkC ++CH G CppC+ XP_022134192.1 236 CGRHKCVEICHDGSCPPCR 254 ******************7 PP
2	zf-NF-X1	17.2	1.1e-05	396	415	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+ G+CppC++ XP_022134192.1 396 CGRHACRRRCCDGDCPPCSE 415 ******************85 PP
3	zf-NF-X1	16.9	1.4e-05	417	441	1	19
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkC ++CH+GpC pCp XP_022134192.1 417 CGrrlrckNHKCPSPCHRGPCAPCP 441 777777779***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MITTHHHGRT ISDSDSNSDD DNAGSEPLRH LDLSDSIFKA YFEFTGRSTT TADLSKIQSF 60 LTSSSSGALS CLICLERIRL SDPTWSCSSL CFAVFHLFCI QSWARQASDL AAARAATRAL 120 VSPDNPDEHS GWNCPKCRGE YSKSSIPKRY FCFCGKLENP PSDDPWILPH SCGEVCGRPL 180 KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVQDARRCG FKNFSCNNVC SKALDCGRHK 240 CVEICHDGSC PPCRIQGVFK CQCGKTMEKR ECWDRNFRCD NECNKLLGCG KHSCNEGCHS 300 GECGQCPFKG RRTCPCGKKA HEGMPCDVAV PLCGATCDKM LACGFHRCPE RCHRGPCIGT 360 CRIVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR 420 LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCLVSPLC 480 SHRLSLKPHK CHYGACPPCR RICEEEYPCG HKCQLRCHGP KPPPKPEYTL KPKKKKAFHP 540 EEPTPGSLCP PCPELVWRPC IGQHIGAERM MVCSNRTLFS CDNLCGNPLP CTNHYCTKIC 600 HALKSQQHPS SSLRDLSEPC EKCNLPCEKE RKPKCAHPCP LKCHPGDCPP CKVLLKRSCH 660 CSSMVHVFEC MYYISLSQEK QMAVRSCGGP CHRKLPYCTH LCPETCHPGE CPAPDNCSKK 720 VTVRCGCQTL KKEWLCKDVQ AAYRKATRDP KDIPKTQYGY GLLPCGSDCK SKVQAVESEL 780 SHRKPEVVGA KELDTKKQVP KRKRRRDSVQ EVEQISRLQK FFAALKYILL LVVLLIAVVS 840 ISSYGYKGLL WLNDWMNEAE KQRQRRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MITTHHHGRT ISDSDSNSDD DNAGSEPLRH LDLSDSIFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL SDPTWSCSSL CFAVFHLFCI QSWARQASDL AAARAATRAL  120
VSPDNPDEHS GWNCPKCRGE YSKSSIPKRY FCFCGKLENP PSDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVQDARRCG FKNFSCNNVC SKALDCGRHK  240
CVEICHDGSC PPCRIQGVFK CQCGKTMEKR ECWDRNFRCD NECNKLLGCG KHSCNEGCHS  300
GECGQCPFKG RRTCPCGKKA HEGMPCDVAV PLCGATCDKM LACGFHRCPE RCHRGPCIGT  360
CRIVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR  420
LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCLVSPLC  480
SHRLSLKPHK CHYGACPPCR RICEEEYPCG HKCQLRCHGP KPPPKPEYTL KPKKKKAFHP  540
EEPTPGSLCP PCPELVWRPC IGQHIGAERM MVCSNRTLFS CDNLCGNPLP CTNHYCTKIC  600
HALKSQQHPS SSLRDLSEPC EKCNLPCEKE RKPKCAHPCP LKCHPGDCPP CKVLLKRSCH  660
CSSMVHVFEC MYYISLSQEK QMAVRSCGGP CHRKLPYCTH LCPETCHPGE CPAPDNCSKK  720
VTVRCGCQTL KKEWLCKDVQ AAYRKATRDP KDIPKTQYGY GLLPCGSDCK SKVQAVESEL  780
SHRKPEVVGA KELDTKKQVP KRKRRRDSVQ EVEQISRLQK FFAALKYILL LVVLLIAVVS  840
ISSYGYKGLL WLNDWMNEAE KQRQRRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	801	806	KRKRRR
2	802	806	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein