PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022134199.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 154aa    MW: 17329.5 Da    PI: 8.3723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022134199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.74e-4312110199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p kf nvhk+FGasnv+k+l+++++++reda++sl+yeAear++dPvyG+vg i+ lq+++ +l++el+
  XP_022134199.1  12 PCAACKFLRRKCLAECIFAPYFPPEEPTKFTNVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELD 106
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_022134199.1 107 ATNT 110
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MACSSSSYSN SPCAACKFLR RKCLAECIFA PYFPPEEPTK FTNVHKIFGA SNVSKILNEV  60
QPHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRHVLR LQKELDATNT DLVRYSTATA  120
TATARPARRP PRHHSGVYFT SNDHDHPYKD QERE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.18e-62LBD family protein