PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134319.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 1544aa MW: 171566 Da PI: 6.6453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0017	1453	1476	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + + H+r+H XP_022134319.1 1453 QCPheGCGKRFSSHKYAMLHQRVH 1476 69999*****************99 PP
2	zf-C2H2	11.1	0.0012	1512	1538	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_022134319.1 1512 YKCKveGCGLSFRFVSDYSRHRRKtgH 1538 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1544 aa Download sequence
MGGVEIPKWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV 60 ISNLNKSLSR STELSPPNVC PSSKLGSADG ANEGEVRAVF TTRHQELGQS VKKTKGVVQN 120 PQFGVHKQVW QSGEKYTLEK FESKSKVFAR SVLSGIKEPS PLVVESLFWK AASGKPIYIE 180 YANDVPGSAF GEPRGKFRYF HRRRRKRNYY HRSKERSSEL RTGEMGTLTD SLSLDSAGTS 240 PRNDLNTSSE ILKASTSTVP SEDTSHNSRG KSSDSCINME GTAGWRLSNS PWNLQVIARS 300 PGSLTRYMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS MNFLHVGSPK TWYSIPGDHA 360 FAFEEVVRTQ AYGGSVDHLA ALTLLGEKTT LLSPETVIAS GIPCCRLIQN PGEFVVTFPR 420 AYHVGFSHGF NCGEAANFGT PQWLSVAKDA AVRRAAMNYL PMLSHQQLLY LLTMSFVSRV 480 PRSLLPGVRS SRLRDRQKEE REFMVKKGFV EDILRENNML SVLLEKESSC RAVLWNPDML 540 PYSSNSQVAT NSAVATSRKE NISCNHTESI DGNDKNMQNF MDEMTLDLDT VNDIYLESDD 600 LSCDFQVDSG TLACVACGIL GFPFMSVVQP SEKAARELSA DNLSIHKRGG VFGPKDAHDS 660 PDFGGTHPED STSVPDVNCL SKNLSVASIP KFDKGWSTFG KFLRPRSFCL QHAVDIIELL 720 KNKGGANILV ICHSDYHKIK ANAVAIAEEI GNHFVYNEVR LDIASEEDLR LIDLAVDVER 780 NECREDWTSR LGINLRHCVK VRKSSPTKQV QHALELGGLF LNRNHGFDLS PINWPSKKSR 840 SKKISRPRYY KPFQSMPLKD EVLGKRSDCK IAKREEKVFQ YYRRNKKSGN SKGVGSATQP 900 VSSGDSIDLC NMRTFRSNTS ELAIPGPIGT TNQQNAVLQD RGNTNSDPAS SMVADSICAV 960 VGRMTEPRIE NCTPEVVDVN GESCHLPVDT SGMQQKIMTT SDTSEPNEKA VLPSFTCPHV 1020 NAINESEMHK EQEIVGSCNN TNQVCDIASE GQSHALADVG LDETSSIHFE SSKVMMDNAD 1080 VRNLNCEACD GTTKDDDAEQ EIEIANRLKD VEEDSCSLIP IKQQHCVATE CDSQLGHLED 1140 RIEQEMEPTC RSNESEPILV NTGTASAATS HSRDENSEVP GVGCEAPNLC NAVTSVDLVN 1200 NCQIDADVET QSVSGVVVQS KTQQSSCLAD ERSFENLGSQ EDKEHLSDIE MRTEPRSLVN 1260 EPGSNSCILG EGRPMDVEAS GKEACDRENL TGGMTPDDAM ECANMSGNQH VDDPSPITLE 1320 THDVAEICSS KHNEQGKNTR NLKSNPSSDV EKRRKRKREE ELIIENGFSS CDFIRSPCEG 1380 LRPRVGKNLT SRTGADVVSV QEKPERERVR KLPDALSPKR KKEIRKGSFK CDLEGCRMSF 1440 ETRAELALHK RNQCPHEGCG KRFSSHKYAM LHQRVHDDDR PLKCPWKGCS MSFKWAWART 1500 EHIRVHTGER PYKCKVEGCG LSFRFVSDYS RHRRKTGHYI DQPV

Sequence ? help Back to Top

Protein Sequence Length: 1544 aa Download sequence

MGGVEIPKWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV  60
ISNLNKSLSR STELSPPNVC PSSKLGSADG ANEGEVRAVF TTRHQELGQS VKKTKGVVQN  120
PQFGVHKQVW QSGEKYTLEK FESKSKVFAR SVLSGIKEPS PLVVESLFWK AASGKPIYIE  180
YANDVPGSAF GEPRGKFRYF HRRRRKRNYY HRSKERSSEL RTGEMGTLTD SLSLDSAGTS  240
PRNDLNTSSE ILKASTSTVP SEDTSHNSRG KSSDSCINME GTAGWRLSNS PWNLQVIARS  300
PGSLTRYMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS MNFLHVGSPK TWYSIPGDHA  360
FAFEEVVRTQ AYGGSVDHLA ALTLLGEKTT LLSPETVIAS GIPCCRLIQN PGEFVVTFPR  420
AYHVGFSHGF NCGEAANFGT PQWLSVAKDA AVRRAAMNYL PMLSHQQLLY LLTMSFVSRV  480
PRSLLPGVRS SRLRDRQKEE REFMVKKGFV EDILRENNML SVLLEKESSC RAVLWNPDML  540
PYSSNSQVAT NSAVATSRKE NISCNHTESI DGNDKNMQNF MDEMTLDLDT VNDIYLESDD  600
LSCDFQVDSG TLACVACGIL GFPFMSVVQP SEKAARELSA DNLSIHKRGG VFGPKDAHDS  660
PDFGGTHPED STSVPDVNCL SKNLSVASIP KFDKGWSTFG KFLRPRSFCL QHAVDIIELL  720
KNKGGANILV ICHSDYHKIK ANAVAIAEEI GNHFVYNEVR LDIASEEDLR LIDLAVDVER  780
NECREDWTSR LGINLRHCVK VRKSSPTKQV QHALELGGLF LNRNHGFDLS PINWPSKKSR  840
SKKISRPRYY KPFQSMPLKD EVLGKRSDCK IAKREEKVFQ YYRRNKKSGN SKGVGSATQP  900
VSSGDSIDLC NMRTFRSNTS ELAIPGPIGT TNQQNAVLQD RGNTNSDPAS SMVADSICAV  960
VGRMTEPRIE NCTPEVVDVN GESCHLPVDT SGMQQKIMTT SDTSEPNEKA VLPSFTCPHV  1020
NAINESEMHK EQEIVGSCNN TNQVCDIASE GQSHALADVG LDETSSIHFE SSKVMMDNAD  1080
VRNLNCEACD GTTKDDDAEQ EIEIANRLKD VEEDSCSLIP IKQQHCVATE CDSQLGHLED  1140
RIEQEMEPTC RSNESEPILV NTGTASAATS HSRDENSEVP GVGCEAPNLC NAVTSVDLVN  1200
NCQIDADVET QSVSGVVVQS KTQQSSCLAD ERSFENLGSQ EDKEHLSDIE MRTEPRSLVN  1260
EPGSNSCILG EGRPMDVEAS GKEACDRENL TGGMTPDDAM ECANMSGNQH VDDPSPITLE  1320
THDVAEICSS KHNEQGKNTR NLKSNPSSDV EKRRKRKREE ELIIENGFSS CDFIRSPCEG  1380
LRPRVGKNLT SRTGADVVSV QEKPERERVR KLPDALSPKR KKEIRKGSFK CDLEGCRMSF  1440
ETRAELALHK RNQCPHEGCG KRFSSHKYAM LHQRVHDDDR PLKCPWKGCS MSFKWAWART  1500
EHIRVHTGER PYKCKVEGCG LSFRFVSDYS RHRRKTGHYI DQPV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1352	1358	KRRKRKR
2	1353	1358	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein