PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022134642.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 368aa MW: 39886.9 Da PI: 5.2767

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022134642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.1e-06	25	65	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ ++ +C+ ++ +lC +C ++H H+ XP_022134642.1 25 KPCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCAnklssrHD 65 57****99******************95545555565 PP
2	zf-B_box	28	4.4e-09	66	112	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_022134642.1 66 RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSAnplarrHERVPV 112 5789*****************************66899999999986 PP
3	CCT	70.2	5e-24	295	338	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_022134642.1 295 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 338 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGLGLEGESV VKGFGGGCGW GVVAKPCDSC KTGPAAVYCR PDSAFLCLTC DAKIHCANKL 60 SSRHDRVWMC EVCEQAPAVV MCKADAAALC VTCDADIHSA NPLARRHERV PVEPFFDTAE 120 SVVKASSSVF NFLLPAETNV SGCDGHHEEV EVASWLLSNP PFNSKLVDGP EIKAGAGGDI 180 FFTENEMDSF IDFDYPNPVN QSAINDSVVP VQTKPLSTPE NCFDIDFCRS KLNSFGYQSQ 240 SLSHSMSSSS LEVGVVPEGN SMSEISYPSG QTMGDSGLAM SGSGNQATQL CGMDREARVL 300 RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDM LTEVDEMYGS GGSSMFLGDA 360 QYGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGLGLEGESV VKGFGGGCGW GVVAKPCDSC KTGPAAVYCR PDSAFLCLTC DAKIHCANKL  60
SSRHDRVWMC EVCEQAPAVV MCKADAAALC VTCDADIHSA NPLARRHERV PVEPFFDTAE  120
SVVKASSSVF NFLLPAETNV SGCDGHHEEV EVASWLLSNP PFNSKLVDGP EIKAGAGGDI  180
FFTENEMDSF IDFDYPNPVN QSAINDSVVP VQTKPLSTPE NCFDIDFCRS KLNSFGYQSQ  240
SLSHSMSSSS LEVGVVPEGN SMSEISYPSG QTMGDSGLAM SGSGNQATQL CGMDREARVL  300
RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDM LTEVDEMYGS GGSSMFLGDA  360
QYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-111	CO-like family protein