PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022134989.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 968aa    MW: 106206 Da    PI: 5.1493
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022134989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.3e-24155256199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + ++++ ++l+++d++ + W++++iyr+k++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_022134989.1 155 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPN-QELVVRDLHDNIWTFRHIYRGKPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 245
                     99*********************999*****954.5444.49************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_022134989.1 246 KSQLMIGVRRA 256
                     7778****997 PP
2Auxin_resp113.52e-37281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022134989.1 281 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 364
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    
MGSVEEKIKT TGGGVGGGGL IINGPQTSLF DEMKLLKEMQ DQTGARKAIN SELWHACAGP  60
LVSLPHVGSL VFYFPQGHSE QVAVSTKRTA TSQIPNYPNL PSQLMCQVQN VTLHADKDSD  120
EIYAQMSLQP VNSEKDVFLV PDFGLRPSKH PNEFFCKTLT ASDTSTHGGF SVPRRAAEKL  180
FPPLDYTMQP PNQELVVRDL HDNIWTFRHI YRGKPKRHLL TTGWSLFVGA KRLRAGDSVL  240
FIRDEKSQLM IGVRRANRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP FTIFYNPRAC  300
PSEFVIPLAK YRKCVYGTQL SAGMRFGMMF ETEESGKRRY MGTIVGISDL DPLRWPGSKW  360
RNLQVEWDEP GCCDKQSRVS SWEIETPESL FIFPSLTSGL KRPLHSGFLG ETDWGSLVKR  420
PVLRVPENVR GDLSYAAPTL CSEPLMKMLL RPQMVNLHGG ATTQQDSVNN LVKLQDMKGM  480
QPIINPKMQQ QQQQLISSET ASPQNQNHHH PAPTPTQSDA INSTSSPETN LPGNVHASAA  540
IESEAPTGAD VVDKPKYERH LSTNESNNPL PPVGDCGEEK LSGNDVNMQT LVNQLSFVNQ  600
NQIPMMQLQP VSWPIQQPQL ESLIPHPQPI DMPQPEFTNS NGLISSLDGD GCLINPSCLP  660
LPGVMRSPGS LSMLGLQESS TMFPEALNFP LPSTTQDMWD PLNSIRFPSQ TNHLVSFSHP  720
DASNLNCMAV NANAMRDVSD ESNNQSGIYS CSNLEISNCG SALVDPAVSS TILDDYCTFK  780
DADFPNPSDC LAGNFSSSQD VQSQITCASL GDSQAFSRQE YHDNSGGTSS CNVDFDEGSL  840
LQNGSWKQVV PPMRTYTKVQ KAGSVGRSID VTSFKNYDEL CSAIECMFGL EGLLNDPRGS  900
GWKLVYVDYE NDVLLIGDDP WEEFVSCVRC IRILSPSEVQ QMSEEGMKLL NSAMMQGVNC  960
SISEGGGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein