PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135353.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 366aa MW: 41408.7 Da PI: 6.4401

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v ++G+ +W++ +++ g++R++k+c++rw +yl XP_022135353.1 14 RGLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.1	5.6e-15	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+el+v++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_022135353.1 69 NFTPQEEELIVRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MVRVPSCDKL NLKRGLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTNY 60 LRPDLKHHNF TPQEEELIVR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPRSTKRIG SLSRDLKTAA FMKPEQHPNS AQQLFKGINA 180 AFSPPAMLLP ETEPVLDKFM NGNVHQLNNN HSLDLLAQLQ AMQLVTEASH CTYNEPIQPH 240 FYAQGSLPPS SSSSSTSSRT SSSAFSWQDF LLEDAFLTSE PRELENIVEF PLNQNGYQTE 300 NEIPKGEVNR EVSAYQYNRL EAMDCLAENI EIEAPSSGES TFIETLLHQD DKIFFDFLNL 360 LEEPLY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MVRVPSCDKL NLKRGLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTNY  60
LRPDLKHHNF TPQEEELIVR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPRSTKRIG SLSRDLKTAA FMKPEQHPNS AQQLFKGINA  180
AFSPPAMLLP ETEPVLDKFM NGNVHQLNNN HSLDLLAQLQ AMQLVTEASH CTYNEPIQPH  240
FYAQGSLPPS SSSSSTSSRT SSSAFSWQDF LLEDAFLTSE PRELENIVEF PLNQNGYQTE  300
NEIPKGEVNR EVSAYQYNRL EAMDCLAENI EIEAPSSGES TFIETLLHQD DKIFFDFLNL  360
LEEPLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	6e-70	MYB family protein