PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022135690.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 430aa MW: 47488.3 Da PI: 9.1584

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022135690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	60	80	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_022135690.1 60 CEICGKGFQRDQNLQLHRRGH 80 *******************88 PP
2	zf-C2H2	12.4	0.00049	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_022135690.1 137 WKCDKCSKKYAVQSDWKAHSKTC 159 58*****************9998 PP
3	zf-C2H2	12.2	0.00054	167	185	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + XP_022135690.1 167 DCGTPFSRRDSYVTHRAYC 185 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MSKEQAISNA FVCNNIPTLG SINNPPVIKK KRNLPGNPDP EAEVVALSPK TLMATNRFLC 60 EICGKGFQRD QNLQLHRRGH NLPWKLKQRS SNNKEGVRKR VYVCPEKGCV HHHPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TKEYKCDCGT PFSRRDSYVT 180 HRAYCVALAE ETARLNAASS TNNNSTIAEN NYHFLKPPHQ IFSSSNIFRL NNSTDESRDH 240 HMVFNNYNLN TPTIGLPFWM MAPAANNNNS HQINDLHDHH HPFSAASSVI SAPSLYSNQD 300 QQAHEAVLGN MSATVLLQKA AQIGVTSSTN DPSLMMGSSF GVKLGDGKGF FSGFYGTNYN 360 SNSMPSCSSL ENGGGEDSGW SNLVQMYPPA KRRHTVSEES VVSGGGEITR DFLGVGVHTI 420 CHPSAVNGWI

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MSKEQAISNA FVCNNIPTLG SINNPPVIKK KRNLPGNPDP EAEVVALSPK TLMATNRFLC  60
EICGKGFQRD QNLQLHRRGH NLPWKLKQRS SNNKEGVRKR VYVCPEKGCV HHHPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TKEYKCDCGT PFSRRDSYVT  180
HRAYCVALAE ETARLNAASS TNNNSTIAEN NYHFLKPPHQ IFSSSNIFRL NNSTDESRDH  240
HMVFNNYNLN TPTIGLPFWM MAPAANNNNS HQINDLHDHH HPFSAASSVI SAPSLYSNQD  300
QQAHEAVLGN MSATVLLQKA AQIGVTSSTN DPSLMMGSSF GVKLGDGKGF FSGFYGTNYN  360
SNSMPSCSSL ENGGGEDSGW SNLVQMYPPA KRRHTVSEES VVSGGGEITR DFLGVGVHTI  420
CHPSAVNGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-120	C2H2 family protein