PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022136477.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25602.8 Da PI: 6.2651

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022136477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.2e-20	58	112	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_022136477.1 58 KKRKLTAQQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 112 56799************************************************95 PP
2	HD-ZIP_I/II	118.1	4.8e-38	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l+++qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ e++rLe+e +L+e+l+e XP_022136477.1 58 KKRKLTAQQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKLHESVVVEKCRLETEILNLKEQLSE 149 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MNHQITEEHQ AVQISQLYTG LYIQMAPQQG NSGESKPRRR RKKNRGSSES EAAAAAAKKR 60 KLTAQQVHLL ETNFGSEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 HLKKLHESVV VEKCRLETEI LNLKEQLSEA EKEKERLMRA DGPLSSSPSP SMSMEAVDPT 180 SYSCLGEFGS YELEDVFYYM PEAESDNTCI YGMEMEWPNP YI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	61	RRRRKKNRGSSESEAAAAAAKKRK
2	39	62	RRRRKKNRGSSESEAAAAAAKKRK
3	40	63	RRRRKKNRGSSESEAAAAAAKKRK
4	41	64	RRRRKKNRGSSESEAAAAAAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-59	HD-ZIP family protein