PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022136848.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 841aa MW: 98734.7 Da PI: 7.1556

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022136848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.3e-06	231	250	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC+++H XP_022136848.1 231 CPFHLKTGACRFGQRCSRIH 250 *******************9 PP
2	zf-CCCH	24.8	3.7e-08	360	387	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f++t tC++G C+F+H+ XP_022136848.1 360 WKIAICGEFMKTRykTCSHGTACNFIHC 387 7889***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence
MEEPKFEGEE EEKPQVGIEA GPLEKPCLTK NLCRKEKRKA LKKMKRKQLR KEVALKKLQE 60 EEARSNDPDE QRRIRLMELE EEERSERERK FFEERERAWM EVMELKKKNM AEEEEEEQRR 120 SVLEEESTAP QDENENEFGE EDGWEYIEGP AEVIWKGEEI ILKKKLIKVP KKSVEPQKSL 180 EDAHRPTSNP LPPQSEAFTD YKNATISSRQ VIEDVASQVP NFGTEQDKSH CPFHLKTGAC 240 RFGQRCSRIH FYPDNSCTLL IKNMYNGPGL AWEQDEGLEF TDEEVERCYE EFYEDVHTEF 300 LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYIAN NGRFYAGKQV ICEFVNITRW 360 KIAICGEFMK TRYKTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYVD 420 ESGNDKHTEL EHWDKLGKSR KSMSTDVDDR YYSRRSKSRS LDHGSGRRRN GEIDYRWTRH 480 SRREKVDERQ KSLDKEAYEK ANLKDDQQRK NRFNGADSDE SADKFERRRK RRDHSQTSRG 540 PRNQDKNQRT RVQIADRDDS ENTSYETDAD LSSGDRDKDG HRRKRRKSNE RVSETSKTID 600 GSPISKSVIN DPDMHGNCSD RNKDRRPISG EKPKKHWDEV PKDSDNQMKQ KSKLKTDYES 660 KKSSTGKICS RHLESGSRDF KTGDSHSIDS LHSDVVSDEN QEASISDRYV ERFKPLDLSE 720 HIEKEGRWDP ERSYDDFEKP SETTSAVHYD SGSPVHYGER SKTDVLGTVD YHDDKVNKQD 780 HSKHRSSDLS EHRRSRRKSS RHDDDQTYSD LKSENKNSDE DYLQKNLRRT SHSRTRRHRH 840 S

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence

MEEPKFEGEE EEKPQVGIEA GPLEKPCLTK NLCRKEKRKA LKKMKRKQLR KEVALKKLQE  60
EEARSNDPDE QRRIRLMELE EEERSERERK FFEERERAWM EVMELKKKNM AEEEEEEQRR  120
SVLEEESTAP QDENENEFGE EDGWEYIEGP AEVIWKGEEI ILKKKLIKVP KKSVEPQKSL  180
EDAHRPTSNP LPPQSEAFTD YKNATISSRQ VIEDVASQVP NFGTEQDKSH CPFHLKTGAC  240
RFGQRCSRIH FYPDNSCTLL IKNMYNGPGL AWEQDEGLEF TDEEVERCYE EFYEDVHTEF  300
LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYIAN NGRFYAGKQV ICEFVNITRW  360
KIAICGEFMK TRYKTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYVD  420
ESGNDKHTEL EHWDKLGKSR KSMSTDVDDR YYSRRSKSRS LDHGSGRRRN GEIDYRWTRH  480
SRREKVDERQ KSLDKEAYEK ANLKDDQQRK NRFNGADSDE SADKFERRRK RRDHSQTSRG  540
PRNQDKNQRT RVQIADRDDS ENTSYETDAD LSSGDRDKDG HRRKRRKSNE RVSETSKTID  600
GSPISKSVIN DPDMHGNCSD RNKDRRPISG EKPKKHWDEV PKDSDNQMKQ KSKLKTDYES  660
KKSSTGKICS RHLESGSRDF KTGDSHSIDS LHSDVVSDEN QEASISDRYV ERFKPLDLSE  720
HIEKEGRWDP ERSYDDFEKP SETTSAVHYD SGSPVHYGER SKTDVLGTVD YHDDKVNKQD  780
HSKHRSSDLS EHRRSRRKSS RHDDDQTYSD LKSENKNSDE DYLQKNLRRT SHSRTRRHRH  840
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	576	585	RDKDGHRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-139	C3H family protein