PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022136998.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 452aa MW: 49702.5 Da PI: 8.4543

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022136998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.3e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022136998.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16	3.3e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022136998.1 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MIANTSPSSL PSSEPFSCLE NGNSNVSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACNMGHLRAE SQSLQAAACL SRTASSPSPS SDTNFSSGPN WSAALIPPPP TLKHPPPAAP 240 THDSNNSIII NNNNNNNSNA CASPLYHNLD LKLSTTSSNA VDASSNRSSP SKGNNNNNKG 300 SSTQLQLSIG SCDFSCSPGE GEDKAVAADV REEAREQLRV AMAEKEYAEE ARQQAKRQIE 360 MAEQEFANAK RMRQQAAAEL DKATALKQAA IKQINSTILE ITCQACRKQF QATATADHHD 420 NSLAFSYVSS VITTEGEVDK HHSTLIPKPT NN

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MIANTSPSSL PSSEPFSCLE NGNSNVSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACNMGHLRAE SQSLQAAACL SRTASSPSPS SDTNFSSGPN WSAALIPPPP TLKHPPPAAP  240
THDSNNSIII NNNNNNNSNA CASPLYHNLD LKLSTTSSNA VDASSNRSSP SKGNNNNNKG  300
SSTQLQLSIG SCDFSCSPGE GEDKAVAADV REEAREQLRV AMAEKEYAEE ARQQAKRQIE  360
MAEQEFANAK RMRQQAAAEL DKATALKQAA IKQINSTILE ITCQACRKQF QATATADHHD  420
NSLAFSYVSS VITTEGEVDK HHSTLIPKPT NN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-111	C2H2 family protein