PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137440.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MIKC_MADS

Protein Properties

Length: 203aa MW: 23274.8 Da PI: 10.6473

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.9e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gk y +ss XP_022137440.1 9 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSS 59 79***********************************************96 PP
2	K-box	77.3	4e-26	82	169	11	98
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ e++ +++ i++L++ +Rh+ GedL++Ls+k+L+qLe+qL +++++RskK +++ e+i+ l++k k++qee+ +L+k+l XP_022137440.1 82 HSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVKDLKQLERQLSVGIERVRSKKRRIISEHINMLKRKYKSVQEEHSRLQKRL 169 556778*******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAYELSVLCD AEVALLVFSP SGKAYQFSSH 60 DMDGTLARYR SDMGLPQSNH PHSRVMFWKS EMEEMRRSIS SLESRLRHFA GEDLGPLSVK 120 DLKQLERQLS VGIERVRSKK RRIISEHINM LKRKYKSVQE EHSRLQKRLN QLKDVDVTAS 180 RTSLDANASS ALEMAFQVDG VLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	1e-45	MIKC_MADS family protein