PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137482.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 345aa MW: 38559.6 Da PI: 6.8462

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4e-16	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll++ + ++G g+W++ a++ g++Rt+k+c++rw++yl XP_022137482.1 44 RGPWTLQEDNLLLHSISLHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 91 89********************************************97 PP
2	Myb_DNA-binding	49.3	1.1e-15	97	140	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++ E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++ XP_022137482.1 97 RGNLSPHEQFLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MCSSPKSISM STSMSSSCSE LEDDSNNNNN NSNYEQEQEQ ELRRGPWTLQ EDNLLLHSIS 60 LHGEGRWNLL AKRSGLKRTG KSCRLRWLNY LKPDVKRGNL SPHEQFLILD LHSKWGNRWS 120 KIAQHLPGRT DNEIKNYWRT RVQKQARHLN IDTNSDAFQQ IIRCYWIPRL LQKINESNSS 180 STSSSPPPPP LQLPSSSESA MVSGQTLMGS QTPMMAAPQP PATTSFQVPL HIGGTTSLNG 240 LKQEENNSGG DFFGSSCNSS SSSSSSSRVV NQISGYPNFE NYGTSFLKDY WHGGHGGAEM 300 MNWPATTSAT GDSSYPVTQC HVAESNWMDT DFAGYMSNMD DLWQF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MCSSPKSISM STSMSSSCSE LEDDSNNNNN NSNYEQEQEQ ELRRGPWTLQ EDNLLLHSIS  60
LHGEGRWNLL AKRSGLKRTG KSCRLRWLNY LKPDVKRGNL SPHEQFLILD LHSKWGNRWS  120
KIAQHLPGRT DNEIKNYWRT RVQKQARHLN IDTNSDAFQQ IIRCYWIPRL LQKINESNSS  180
STSSSPPPPP LQLPSSSESA MVSGQTLMGS QTPMMAAPQP PATTSFQVPL HIGGTTSLNG  240
LKQEENNSGG DFFGSSCNSS SSSSSSSRVV NQISGYPNFE NYGTSFLKDY WHGGHGGAEM  300
MNWPATTSAT GDSSYPVTQC HVAESNWMDT DFAGYMSNMD DLWQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	6e-73	MYB family protein