PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137491.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

LBD

Protein Properties

Length: 203aa MW: 21959.7 Da PI: 6.9923

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.1	1.8e-30	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+ ++ p++q +++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_022137491.1 2 SCNGCRVLRKGCSEGCVLRSCLhwidsPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaela 95 +ae++ XP_022137491.1 97 AAETV 101 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MSCNGCRVLR KGCSEGCVLR SCLHWIDSPE SQGNATLFLA KFFGRSDLLS FISAVPDHQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQAAAET VLGGGVLRPI PGIDVSGNST 120 GHVDESSVSF STDVWTTQNL QFYPSVPSGY RRLSDLGGGK NHYPQMENRR SLDSEESVMT 180 SFGSGDLGDG DRRKERKLLN LFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	198	DRRKERKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	9e-66	LBD family protein