PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022137568.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28532.6 Da    PI: 9.5766
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022137568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_022137568.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box1072.2e-35781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ ++++++ + +++ e+akLk+++e Lq+++Rh++Ge+L+sLslkeLq++eqqL+++lk+iR++Kn+l++e+i+elqkk k+lqe+n++L kk+
  XP_022137568.1  78 RRLVANDNQSNGNWTLEHAKLKARVEVLQKNHRHFMGEELDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKI 172
                     556667888899**********************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_022137568.1 173 KE 174
                     87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMEKILERY ERYSYAERRL VANDNQSNGN WTLEHAKLKA RVEVLQKNHR HFMGEELDSL  120
SLKELQNIEQ QLDSALKHIR ARKNQLMHES ISELQKKDKA LQEQNNMLAK KIKEKEKAQA  180
QNPQLEQQQQ SSHGIESSPL LIPQPFHSLN MTCPYPTRDT GGEDITACHD RSGALLPPWM  240
LRHHLGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-91MIKC_MADS family protein