PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022138015.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 482aa MW: 51837.9 Da PI: 8.4569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022138015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.2e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022138015.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP
2	zf-CCCH	37.9	2.9e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_022138015.1 95 QPVCQYYMRTGMCKFGSSCKYHHPQ 119 689********************97 PP
3	zf-CCCH	35.8	1.3e-11	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_022138015.1 142 GEKECSYYLKNGQCKFGATCKFHHPE 167 6789********************96 PP
4	zf-CCCH	34	5.1e-11	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+ ++C+++H+p XP_022138015.1 305 PGQPECQYYMRTGDCKFESSCRYHHPP 331 5789*********************97 PP
5	zf-CCCH	33.6	6.5e-11	353	377	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ XP_022138015.1 353 APPCTHFMQRGMCKFGPACKFDHSM 377 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MKPYGQSIDA SHSDPSPEWT APGPDTAHGE PLWQLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERIGQPVCQY YMRTGMCKFG SSCKYHHPQQ 120 DKGSLSPVSL NFYGYPLRPL QGEKECSYYL KNGQCKFGAT CKFHHPEPAG LQFPAPSPVQ 180 VTPVPAPVPG PSVYPPVQSP SAHSSQQYGV ILARPSLLSS PYVHGPYGPM LVSPGVVQFP 240 SWSPYPAPMS PVASPSAQPS VGSGQLYGVA QVSPSATAYA GSYQPMPSAG PSSTSQKEHS 300 FPERPGQPEC QYYMRTGDCK FESSCRYHHP PELVASRSSV VLSQLGLPLR PGAPPCTHFM 360 QRGMCKFGPA CKFDHSMERL SYSPSASSLA DMPVAPYPVG SVAGTLAPSS SSSELRPEHF 420 SGSRKDSNPS RMSSSMSTSS GLVGSTTSRT EMHSHSSVQR SSQSSGPSVS STTSTTGVEG 480 RT

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MKPYGQSIDA SHSDPSPEWT APGPDTAHGE PLWQLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERIGQPVCQY YMRTGMCKFG SSCKYHHPQQ  120
DKGSLSPVSL NFYGYPLRPL QGEKECSYYL KNGQCKFGAT CKFHHPEPAG LQFPAPSPVQ  180
VTPVPAPVPG PSVYPPVQSP SAHSSQQYGV ILARPSLLSS PYVHGPYGPM LVSPGVVQFP  240
SWSPYPAPMS PVASPSAQPS VGSGQLYGVA QVSPSATAYA GSYQPMPSAG PSSTSQKEHS  300
FPERPGQPEC QYYMRTGDCK FESSCRYHHP PELVASRSSV VLSQLGLPLR PGAPPCTHFM  360
QRGMCKFGPA CKFDHSMERL SYSPSASSLA DMPVAPYPVG SVAGTLAPSS SSSELRPEHF  420
SGSRKDSNPS RMSSSMSTSS GLVGSTTSRT EMHSHSSVQR SSQSSGPSVS STTSTTGVEG  480
RT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-127	C3H family protein