PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022138016.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 480aa MW: 51596.6 Da PI: 8.4569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022138016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.2e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022138016.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP
2	zf-CCCH	37.9	2.9e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_022138016.1 95 QPVCQYYMRTGMCKFGSSCKYHHPQ 119 689********************97 PP
3	zf-CCCH	36.2	1e-11	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_022138016.1 140 GEKECSYYLKNGQCKFGATCKFHHPE 165 7899********************96 PP
4	zf-CCCH	34	5.1e-11	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+ ++C+++H+p XP_022138016.1 303 PGQPECQYYMRTGDCKFESSCRYHHPP 329 5789*********************97 PP
5	zf-CCCH	33.6	6.5e-11	351	375	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ XP_022138016.1 351 APPCTHFMQRGMCKFGPACKFDHSM 375 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MKPYGQSIDA SHSDPSPEWT APGPDTAHGE PLWQLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERIGQPVCQY YMRTGMCKFG SSCKYHHPQQ 120 DKGSLSPVSL NFYGYPLRPG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVT 180 PVPAPVPGPS VYPPVQSPSA HSSQQYGVIL ARPSLLSSPY VHGPYGPMLV SPGVVQFPSW 240 SPYPAPMSPV ASPSAQPSVG SGQLYGVAQV SPSATAYAGS YQPMPSAGPS STSQKEHSFP 300 ERPGQPECQY YMRTGDCKFE SSCRYHHPPE LVASRSSVVL SQLGLPLRPG APPCTHFMQR 360 GMCKFGPACK FDHSMERLSY SPSASSLADM PVAPYPVGSV AGTLAPSSSS SELRPEHFSG 420 SRKDSNPSRM SSSMSTSSGL VGSTTSRTEM HSHSSVQRSS QSSGPSVSST TSTTGVEGRT

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MKPYGQSIDA SHSDPSPEWT APGPDTAHGE PLWQLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERIGQPVCQY YMRTGMCKFG SSCKYHHPQQ  120
DKGSLSPVSL NFYGYPLRPG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVT  180
PVPAPVPGPS VYPPVQSPSA HSSQQYGVIL ARPSLLSSPY VHGPYGPMLV SPGVVQFPSW  240
SPYPAPMSPV ASPSAQPSVG SGQLYGVAQV SPSATAYAGS YQPMPSAGPS STSQKEHSFP  300
ERPGQPECQY YMRTGDCKFE SSCRYHHPPE LVASRSSVVL SQLGLPLRPG APPCTHFMQR  360
GMCKFGPACK FDHSMERLSY SPSASSLADM PVAPYPVGSV AGTLAPSSSS SELRPEHFSG  420
SRKDSNPSRM SSSMSTSSGL VGSTTSRTEM HSHSSVQRSS QSSGPSVSST TSTTGVEGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-129	C3H family protein