PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022139192.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 202aa    MW: 22560.2 Da    PI: 4.9608
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022139192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.9e-36131131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  e+ +++fa+vhk+FGasnv+kll +lp ++r++a+ +++yeA  r+rdP yG++++i++lqq++++l++e+
  XP_022139192.1  13 SCGACKFLRRKCSDQCVFAPFFSYEEaTSHFAAVHKVFGASNVSKLLLHLPVHNRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEI 107
                     6*********************998868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  XP_022139192.1 108 EILGSQ 113
                     999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MTGFAYSSSS FSSCGACKFL RRKCSDQCVF APFFSYEEAT SHFAAVHKVF GASNVSKLLL  60
HLPVHNRSHA AITVAYEALE RMRDPTYGCI AHIFALQQEV ASLQEEIEIL GSQIANFTTA  120
TDTVATTENP FIELQVSQQL SDFVMNTDDY QNHLFSQLPH QTFDHRGQND AQMISPLCCL  180
GEENGYFGCN PNAMENFASY PW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-57LBD family protein