PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022139243.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 356aa MW: 40798.3 Da PI: 8.3347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022139243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	64	84	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp Cg F+ + +Lk+H+ +H XP_022139243.1 64 CPECGAAFKKPAYLKQHMLSH 84 *******************99 PP
2	zf-C2H2	16.3	2.7e-05	90	114	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ C s++rk++L+rH+ H XP_022139243.1 90 YICSidGCQASYRRKDHLTRHLLQH 114 899999***************9887 PP
3	zf-C2H2	16.2	3e-05	119	144	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp C+ F ++++LkrH ++ H XP_022139243.1 119 FKCPieSCSNEFASQDSLKRHWKNfH 144 89*********************988 PP
4	zf-C2H2	19.9	2e-06	158	182	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s+L++H +H XP_022139243.1 158 FVCPedGCGKVFRYGSQLQKHEDSH 182 89*******************9888 PP
5	zf-C2H2	22.9	2.3e-07	249	273	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +Cp C+k+Fs+ snL++H+++ H XP_022139243.1 249 QCPheGCSKVFSTDSNLRQHMKVvH 273 79999*****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGKAAEHDCG ILSEGGRCFC KNSGIEKSDE SMVSSHISAH HKMGSDTQQD VREGKTKDGK 60 SNICPECGAA FKKPAYLKQH MLSHSLERPY ICSIDGCQAS YRRKDHLTRH LLQHQGNVFK 120 CPIESCSNEF ASQDSLKRHW KNFHEDDARP EAKCEKQFVC PEDGCGKVFR YGSQLQKHED 180 SHVKLDSIEA YCAEPGCMRP FTNKQCLKAH IQSCHQYIKC EICGSEKLRK NIKRHLRKHE 240 SEGPQKIIQC PHEGCSKVFS TDSNLRQHMK VVHLEQKPFE CSFSGCGMRF GYRHVRDNHE 300 RSGHHVYING DFEVADEQFR SKPRGGRKRK CPTVEMLIRK RVTPPSELDF MLNEEC

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGKAAEHDCG ILSEGGRCFC KNSGIEKSDE SMVSSHISAH HKMGSDTQQD VREGKTKDGK  60
SNICPECGAA FKKPAYLKQH MLSHSLERPY ICSIDGCQAS YRRKDHLTRH LLQHQGNVFK  120
CPIESCSNEF ASQDSLKRHW KNFHEDDARP EAKCEKQFVC PEDGCGKVFR YGSQLQKHED  180
SHVKLDSIEA YCAEPGCMRP FTNKQCLKAH IQSCHQYIKC EICGSEKLRK NIKRHLRKHE  240
SEGPQKIIQC PHEGCSKVFS TDSNLRQHMK VVHLEQKPFE CSFSGCGMRF GYRHVRDNHE  300
RSGHHVYING DFEVADEQFR SKPRGGRKRK CPTVEMLIRK RVTPPSELDF MLNEEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-128	C2H2 family protein