PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022139253.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

NF-YC

Protein Properties

Length: 261aa MW: 28829.5 Da PI: 4.7212

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022139253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.7	5.2e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r XP_022139253.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSYSVF 60 DFLRDIVSRV PDYGHGHSDG AVDDRKRRKP LGDEGNDFDE LKKSKMHDMS HSSGGRGRGR 120 GRGRGRGRPA RSAERDNFQT NPDADPCSSI ENRNKNHPNP DVHMDHHVEP SETSKEVGEA 180 NQPVQSFDLN ADVIANGDSK TVVAAAAVSD TPVESAGPTI TESETKAADE FVDKMAIDPL 240 QYAHLSSTRV EEEEEDYDEE E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	125	RGRGRGRGRG
2	116	126	RGRGRGRGRGR
3	118	127	RGRGRGRGRG
4	118	128	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-51	NF-YC family protein