PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022139885.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28066.7 Da    PI: 9.7536
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022139885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.6e-312372150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  XP_022139885.1 23 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 72
                    79***********************************************8 PP
2K-box112.83.3e-37921875100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     s  s++ea+a+ +qqe+akL+++i nLq+ +RhllG++++sLs+k+L++Le +Lek++++iRs+Knell+++ie++qk+e el+++n+ Lr+k++
  XP_022139885.1  92 SAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKIA 186
                     556699***************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_022139885.1 187 E 187
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MAYPDERQVE QQRRSGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALV  60
VFSSRGRLYE YANNSVRATI SRYKKACSDP SSAGSVSEAN AQFYQQESAK LRSQIGNLQN  120
LNRHLLGDSI SSLSVKDLKS LEVKLEKGIS RIRSRKNELL FAEIEYMQKR EVELHNNNQL  180
LRAKIAESDR NQQNQNPSTA MGEGGAPNFE QYDSRNYFQL NNHISLQLVR RGSLYCGCFC  240
SIELSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein