PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140183.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

LSD

Protein Properties

Length: 131aa MW: 14280.3 Da PI: 5.0644

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.4	3.7e-11	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL Y GA++VRC++C tV XP_022140183.1 42 CGSCRRLLKYLKGARYVRCSCCSTV 66 ***********************99 PP
2	zf-LSD1	40.3	5.2e-13	80	103	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C lL+YP+GA+sVRC++C XP_022140183.1 80 CGSCALLLMYPYGASSVRCSSCTN 103 **********************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence
MEFQEIDNDE DDGPPPGWEP ITPPPPPPPP PPLSSDMAQM VCGSCRRLLK YLKGARYVRC 60 SCCSTVNYVL EAQEVGQVKC GSCALLLMYP YGASSVRCSS CTNVTEIGVH NRRPPWSVQQ 120 GQATPPTNVV Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-41	LSD family protein