PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140594.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 801aa MW: 88714.8 Da PI: 6.9709

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.7e-23	170	271	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022140594.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfptldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGE 260 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022140594.1 261 NGELRLGIRRA 271 9999**996 PP
2	Auxin_resp	119.7	2.3e-39	296	377	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++F+++++k++k+++++v++G+Rfkm+fe++ds+err+sG+v+ + d+dp+rWpnSkWr+L XP_022140594.1 296 VVKAISTKSMFDVFYNPRAYHAQFIISCQKYVKSINNPVIIGTRFKMRFEMDDSPERRFSGVVIEIGDMDPFRWPNSKWRCL 377 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MEIDLNQTAS EVGKNAYCNG NCDEGRCNCC LSSSTSSCSS NSSSTPVSSS TYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQIASSASP FSPMEMRPFD LHPQILCKVT NVQLLANKEN 120 DEVYTQLTLL PLPELLGTDL GGKTLEELAL NGADGDGSGG SPTRSTPHMF CKTLTASDTS 180 THGGFSVPRR AAEDCFPTLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS 240 IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLACVVKAI 300 STKSMFDVFY NPRAYHAQFI ISCQKYVKSI NNPVIIGTRF KMRFEMDDSP ERRFSGVVIE 360 IGDMDPFRWP NSKWRCLMVQ WDKDSDHQER VSPWEIDPSV ALPHLSVQSS PRLKKLRTSL 420 QAPPNNPFTG RGGFMDFEDS IRSSKVLQGQ ENVGLVSPFY GRDTAKCSLE FEVRSSAQQN 480 QASGGVEKLN IGDYVKVHTN SSFTGFMESD RFLKVLQGQE ICSLRPPTRK AEYSLGVWGK 540 LNLSDNSFNT FQPPNSGFYH MASNGAQNMY FPRSEIYSTG PAPMMRSNDS HFPRESALFN 600 PSAVDASIIR TKMERANRSV NRESVHLVSA PPTLGSNMRS SKDENANEKN TTGCKLFGFS 660 LTSETATNLQ SSGKRSCTKV HKQGSLVGRA IDLSRLNGYT DLLSELERLF SMEGLLKDPD 720 KGWRVLYTDI ENDVMVVGDY PWHDFCDAVS KIHIYTQEEV EKMTNGVTSD DTQSCLDQAP 780 LCKEASKSSS VGQPDSPPTV V

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MEIDLNQTAS EVGKNAYCNG NCDEGRCNCC LSSSTSSCSS NSSSTPVSSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASSASP FSPMEMRPFD LHPQILCKVT NVQLLANKEN  120
DEVYTQLTLL PLPELLGTDL GGKTLEELAL NGADGDGSGG SPTRSTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPTLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS  240
IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLACVVKAI  300
STKSMFDVFY NPRAYHAQFI ISCQKYVKSI NNPVIIGTRF KMRFEMDDSP ERRFSGVVIE  360
IGDMDPFRWP NSKWRCLMVQ WDKDSDHQER VSPWEIDPSV ALPHLSVQSS PRLKKLRTSL  420
QAPPNNPFTG RGGFMDFEDS IRSSKVLQGQ ENVGLVSPFY GRDTAKCSLE FEVRSSAQQN  480
QASGGVEKLN IGDYVKVHTN SSFTGFMESD RFLKVLQGQE ICSLRPPTRK AEYSLGVWGK  540
LNLSDNSFNT FQPPNSGFYH MASNGAQNMY FPRSEIYSTG PAPMMRSNDS HFPRESALFN  600
PSAVDASIIR TKMERANRSV NRESVHLVSA PPTLGSNMRS SKDENANEKN TTGCKLFGFS  660
LTSETATNLQ SSGKRSCTKV HKQGSLVGRA IDLSRLNGYT DLLSELERLF SMEGLLKDPD  720
KGWRVLYTDI ENDVMVVGDY PWHDFCDAVS KIHIYTQEEV EKMTNGVTSD DTQSCLDQAP  780
LCKEASKSSS VGQPDSPPTV V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein