PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140647.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 407aa MW: 44323.6 Da PI: 5.8398

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.2	2.2e-05	2	35	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 e+ C+ ++ ++ +C++++ lC C + H+ XP_022140647.1 2 EPLCEFCGVVRAVVYCKSDSARLCLHCDGSVHSA 35 689****99***************999954 PP
2	CCT	62.8	1.1e-21	351	394	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_022140647.1 351 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 394 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MEPLCEFCGV VRAVVYCKSD SARLCLHCDG SVHSANSLSR RHLRSLLCDK CNAQPAIVRC 60 MDDKLSLCHG CDWNGNACSS VGHRRPVLHC YTGCPSMPEF SRIWSSVLEA PSCSTGFDAA 120 ADWASLPTPS INDNSISLTD VEAAGLGAPK LNDLDSCSKF EPWIAPASAF PPNPSYQLPF 180 SRPQPSFLSD DSDLPKSCTD FKDIATHDNN DICEGLNIGN VPLNLEGGEE LFACPQGTES 240 NGPVENAIEE SSPGQQDYMG FHSSQVGLSM NTIQNGNSNC MLMNPSCNGN LNIGFPTGQV 300 HSSISLSLSN ITGESSAADY QDCGLSPAFL TETSWDPSME VIGPQAKDRN RDKAKMRYNE 360 KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD PLVTRNF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MEPLCEFCGV VRAVVYCKSD SARLCLHCDG SVHSANSLSR RHLRSLLCDK CNAQPAIVRC  60
MDDKLSLCHG CDWNGNACSS VGHRRPVLHC YTGCPSMPEF SRIWSSVLEA PSCSTGFDAA  120
ADWASLPTPS INDNSISLTD VEAAGLGAPK LNDLDSCSKF EPWIAPASAF PPNPSYQLPF  180
SRPQPSFLSD DSDLPKSCTD FKDIATHDNN DICEGLNIGN VPLNLEGGEE LFACPQGTES  240
NGPVENAIEE SSPGQQDYMG FHSSQVGLSM NTIQNGNSNC MLMNPSCNGN LNIGFPTGQV  300
HSSISLSLSN ITGESSAADY QDCGLSPAFL TETSWDPSME VIGPQAKDRN RDKAKMRYNE  360
KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD PLVTRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-87	CO-like family protein