PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022141382.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 850aa    MW: 94522.9 Da    PI: 6.1237
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022141382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022141382.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************86555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022141382.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp117.98.3e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW nS+Wrs+k
  XP_022141382.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWANSHWRSVK 337
                     79********************************86599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    
MKLSTSGFGQ QDHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNK  60
EVDGHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTAQEQKD TFLPMELGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LTKYVKAVFH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWAN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHP GVSSVHDNRD DASNGLMWLR GGAGEQGLHS LNLQSVGSLP  420
WLQQRIDSSM FGNDHNQQYQ AMLAAGMPNL GGVDMLRQQI MHLQQPFQYI QPAGFHNSLL  480
QLQQQQQQQQ QQLVQQSMPQ NILQAPSQVM AENLPQHILQ QTLQNQPEDL PDQQQHTSYH  540
DTLQVQSNQF HQGGHSNVPS PTFPRTDLMD SNTNYSESIT SRRNILASSC PEGTGNLSNI  600
YRSGQPILTE QLTQQSHVSK NAPSQVDAHA NSMSFPPFSG RDSILELGNC NSDAPSPTLF  660
GVNIDSSGLL LPSNVPTFAS PSIGPDSSSM PLGDSGFQNS LYSCVQDSSE LLHSSGQVDP  720
SNPTRTFVKV YKSGSVGRSL DISRFSSYQE LREELAQMFG IEGQLEDPHR SGWQLVFVDR  780
ENDVLLLGDD PWEAFVNNVW YIKILSPQDF QKLGEQAIES FNPMVGQRVT SGGNEAENVS  840
GLPSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein