PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022142187.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 728aa    MW: 79195 Da    PI: 7.405
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022142187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_022142187.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVATDLLGQKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 240
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_022142187.1 241 GELRLGIRRA 250
                     999****996 PP
2Auxin_resp115.83.9e-38275356182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+stks F+v+YnPras+s+Fv +++k++k++++++svGmRf+++feted++ rr++G+++gv d+dp+rWp+S+WrsL
  XP_022142187.1 275 VVNAISTKSSFSVYYNPRASSSQFVLPLHKFLKSINHPFSVGMRFRLSFETEDAADRRYTGLISGVGDVDPIRWPGSRWRSL 356
                     689*****************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    
MGALIDLNTT EEDEAPSSAA SSASSSSASA FTSSPSPSVA SSICLELWHA CAGPLTSLPK  60
KGSLVLYLPQ GHLEMLEFPP TACDLPPHIL CRVIDVQLHA EAGSDEVYAQ VSLFPENEQI  120
ENRMQEEMNN DSEEEDVEGG EKTTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
NQQRPSQELV ATDLLGQKWK FRHIYRGQPR RHLLTTGWSA FVNKKRLVSG DAVLFLRGND  240
GELRLGIRRA AQLKSGSAFP NICSQHVSSS SIMEVVNAIS TKSSFSVYYN PRASSSQFVL  300
PLHKFLKSIN HPFSVGMRFR LSFETEDAAD RRYTGLISGV GDVDPIRWPG SRWRSLVVRW  360
DDVESNRHGR VSPWEIEPSG SASTPSNLVP PGLKRTRIGL SSTKLEFPVP NGIGTSDFGE  420
SLRFQKVLQG QEILGYNTPP IDGDNITRHP PEKRRLFPGL HGSGIAMMRN GPRNPFINSE  480
TSSRGIVFDE SFQFHKVLQG QEIFPSPFYG RAMATNEVKA SGGCGAIEGI RLSRSKDGWP  540
PMAMQCENFL GRSSIPSVQV SSPSSVFMFQ QSMVPVQSFN THNRGDFAEQ RITNKSTSLS  600
GTAFTTDHSS NTEVPQGMHP TSLGEQNQLG LSHLSTTASV FSGCKDLSST CKAGCRLFGF  660
SLTEEKNAGN ADKASPATSA VNAGTTTVLS NIGVQCPRKS PLMSKVVGSN CTKVSNLPAR  720
AVEAIYFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein