PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022143485.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

GRAS

Protein Properties

Length: 489aa MW: 54232.9 Da PI: 6.4559

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022143485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	129	5.4e-40	258	385	1	128
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++c+ea+ s++ l+++l+ +l lasp+g +p++Rl+ay+teALa r++r +++++++ +p++ + + ++ +al+l++evsPi+kf XP_022143485.1 258 LISLLMSCVEAIGSKNIGLINHLIDKLGSLASPRGpSPITRLIAYYTEALALRVTRVWPQVFHITTPRDFD-RIDDDCGTALRLLNEVSPIPKFI 351 6799*****************************9***************************9998.5577888999********* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaL 128 h+taN+++l+a+eg++rvHiiDfdi+qGlQWp+L XP_022143485.1 352 HFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPSL 385 ******************************98 PP
2	GRAS	54.5	2.3e-17	386	475	292	373
GRAS 292 reivnvvacegaerrerhetlekWrerlee.aGFkpvpls.ekaakqaklllrkvk.sdgyrve...ee..sgslvlgWkdrpLvsvSaW 373 rei+n++ ceg+er erh +ekW++ +ee G++ v ++ +++ q + ll++++ s g++ve ee + + l W+++p++++SaW XP_022143485.1 386 REIRNMIGCEGRERYERHVGFEKWKKVMEEeGGMQCVGIRvDRELLQSQFLLKMYSsSSGFNVEkigEEggAEGIRLSWEEQPIYTLSAW 475 79************************98589**8356789**************665334445566************ PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MLAGCSSSTL LSPRNRLRSE AQPQFQACHL QLPSSMSTQR LDLPCSFSRS KDASAAARSP 60 SIRPVALSVE KQSIRLPPLA ATGQPIKQEF WKRKGKNLKR IAEQVGIDDD DESSISSAKR 120 KRESREDGRE GLILSQFGGG AGSFWFHQPD GDEETLCFLP GSEVISSPPS FLAEFADLGR 180 RNDGETSHVK ADNDSGSGSG SSSSSESERF ALRTRITTEN VSAAAPEIGN GSSRNPSYHH 240 HQGSNLDHQR QEEEGFELIS LLMSCVEAIG SKNIGLINHL IDKLGSLASP RGPSPITRLI 300 AYYTEALALR VTRVWPQVFH ITTPRDFDRI DDDCGTALRL LNEVSPIPKF IHFTANEMLL 360 RAFEGKDRVH IIDFDIKQGL QWPSLREIRN MIGCEGRERY ERHVGFEKWK KVMEEEGGMQ 420 CVGIRVDREL LQSQFLLKMY SSSSGFNVEK IGEEGGAEGI RLSWEEQPIY TLSAWAPAEA 480 SLSSFSHPK

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MLAGCSSSTL LSPRNRLRSE AQPQFQACHL QLPSSMSTQR LDLPCSFSRS KDASAAARSP  60
SIRPVALSVE KQSIRLPPLA ATGQPIKQEF WKRKGKNLKR IAEQVGIDDD DESSISSAKR  120
KRESREDGRE GLILSQFGGG AGSFWFHQPD GDEETLCFLP GSEVISSPPS FLAEFADLGR  180
RNDGETSHVK ADNDSGSGSG SSSSSESERF ALRTRITTEN VSAAAPEIGN GSSRNPSYHH  240
HQGSNLDHQR QEEEGFELIS LLMSCVEAIG SKNIGLINHL IDKLGSLASP RGPSPITRLI  300
AYYTEALALR VTRVWPQVFH ITTPRDFDRI DDDCGTALRL LNEVSPIPKF IHFTANEMLL  360
RAFEGKDRVH IIDFDIKQGL QWPSLREIRN MIGCEGRERY ERHVGFEKWK KVMEEEGGMQ  420
CVGIRVDREL LQSQFLLKMY SSSSGFNVEK IGEEGGAEGI RLSWEEQPIY TLSAWAPAEA  480
SLSSFSHPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	4e-80	GRAS family protein