PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022143896.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 24204.1 Da PI: 6.949

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022143896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.2e-20	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++qle+Le+ F ++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k XP_022143896.1 56 KKRRLSNDQLEVLERSFGEEVKLDPDRKIKLSKQLGLQPRQIAVWFQNRRARWK 109 45689************************************************9 PP
2	HD-ZIP_I/II	121.2	5.2e-39	56	145	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrls++q+++LE+sF ee kL+p+rK +l+++Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d++++e+++L++ev +Lr+ + XP_022143896.1 56 KKRRLSNDQLEVLERSFGEEVKLDPDRKIKLSKQLGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQEFDTISKEKNNLQQEVMKLRSMI 145 9*************************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MDWNGIFRPP PFLSESSSPF LYNLDNHFPP ELEFGMKQAG AVDGRQLGVA GGGVDKKRRL 60 SNDQLEVLER SFGEEVKLDP DRKIKLSKQL GLQPRQIAVW FQNRRARWKA KQLEHLYDAL 120 KQEFDTISKE KNNLQQEVMK LRSMIIEQAA RNQGSGADVS GEETVESTSV GGRSCCNNYI 180 YNVAEDFNQI SASASASASA SASPLFWGAG HHLPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	85	KKRRLSNDQLEVLERSFGEEVKLDPDRKIK
2	104	112	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-43	HD-ZIP family protein