PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022144840.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family YABBY
Protein Properties Length: 187aa    MW: 20996.9 Da    PI: 7.6609
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022144840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY199.41.5e-6171645170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++  +    ++  +    ++ +++        +s++ +++
  XP_022144840.1   7 IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV-QV---PN-YNLYSCSGPDFQGD---FG-SSSKCNNN 92 
                     689**********************************************999999985.22...11.22222222222222...22.22222333 PP

           YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     k++      +p   + v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  XP_022144840.1  93 KMEIRAPTTIPAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGL 164
                     444455555555444489****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MASCIDIAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQVPNYN LYSCSGPDFQ GDFGSSSKCN NNKMEIRAPT TIPAEERVVN RPPEKRQRVP  120
SAYNQFIKEE IQRIKANNPE ISHREAFSTA AKNWAHFPRI HFGLMLETNN NQVKLDDGLS  180
RAALLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.18e-84YABBY family protein