PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022145151.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 250aa MW: 27751.2 Da PI: 8.7308

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022145151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	121	142	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e Cr f+ + C yG++C++ H XP_022145151.1 121 EVCRLFRSGKGCAYGANCRYLH 142 7899666666************ PP
2	zf-CCCH	36.3	9.7e-12	201	227	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t++C ++ tG+C+yG+ C+F+Hg+ XP_022145151.1 201 FRTRPCYPWQTTGHCPYGNACRFIHGE 227 589**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MRAPYPSNRI TSPVPEASGD RPPLPPQFSY GPRLSSLQPR MPGTVPSFRM PVIHEAMPSN 60 SEISPRNNLN VGLHFRGMMH TYTPAFNDPR KSSPSCQGIE SHEGRWAGSS NAGCGTSNGI 120 EVCRLFRSGK GCAYGANCRY LHEIPEKTMD SGFSSQNYKV GGVVSGHVMD RRSEFDKSKE 180 VRTTGETKIS VHSEIPKPEY FRTRPCYPWQ TTGHCPYGNA CRFIHGETGI DIALVFFSFG 240 ENRTTEAWIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-10	C3H family protein