PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022145902.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 419aa MW: 46140.4 Da PI: 9.8259

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022145902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.3	1.5e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H XP_022145902.1 60 FVCEICNKGFRRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	17.5	1.2e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H +t+ XP_022145902.1 139 WKCEKCSKKYAVQSDLKAHTKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MSRISGCSED GEREKLGNQF SHESSQLGAP KKKRNLPGTP DPDAVVVALS PETLMTTNRF 60 VCEICNKGFR RDQNLQLHRR GHNLPWKLKQ RTGGSGSEMK RRVYVCPEPT CVHHSPARAL 120 GDLTGVKKHF SRKHGEKKWK CEKCSKKYAV QSDLKAHTKT CGSKEYKCDC GTIFSRRDSF 180 ITHRAFCDAL TEENNKLARR GAMASTMASP FQQQVPRLPS PPLTLPHDLM PIPPKPLNVS 240 AGAMFSSSNS ERNDHQFPSP SALMSATALL QKAXQMGAAV SSSGSPTTSS SMTQHKKGYV 300 TRMAPSSFGG LFPQTVASLP TSYLQKCPQG TTSAQLLYDC STVDVEMIND ISTLNGMFDQ 360 PLMEATRKKM NDKNGAAKTM TLDLLGAEGA KKEDPFGGLM ENMSYFRHQA AMGRHTWEI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MSRISGCSED GEREKLGNQF SHESSQLGAP KKKRNLPGTP DPDAVVVALS PETLMTTNRF  60
VCEICNKGFR RDQNLQLHRR GHNLPWKLKQ RTGGSGSEMK RRVYVCPEPT CVHHSPARAL  120
GDLTGVKKHF SRKHGEKKWK CEKCSKKYAV QSDLKAHTKT CGSKEYKCDC GTIFSRRDSF  180
ITHRAFCDAL TEENNKLARR GAMASTMASP FQQQVPRLPS PPLTLPHDLM PIPPKPLNVS  240
AGAMFSSSNS ERNDHQFPSP SALMSATALL QKAXQMGAAV SSSGSPTTSS SMTQHKKGYV  300
TRMAPSSFGG LFPQTVASLP TSYLQKCPQG TTSAQLLYDC STVDVEMIND ISTLNGMFDQ  360
PLMEATRKKM NDKNGAAKTM TLDLLGAEGA KKEDPFGGLM ENMSYFRHQA AMGRHTWEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	3e-91	C2H2 family protein