PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022146502.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

LBD

Protein Properties

Length: 232aa MW: 25785.9 Da PI: 5.1273

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022146502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.2	3.7e-35	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC +lrrkC +dCv+ap+fpa++++kf+++ + +Gasn+ k+ ++l+++er++a++slvyeAear dPvyG+vg+i+ l +l++ +++l+ XP_022146502.1 14 PCAACNYLRRKCFSDCVFAPHFPADDAEKFEIACRTYGASNIFKIFSRLRHDERDEAAASLVYEAEARRIDPVYGCVGFISILDDRLKRIQSDLV 108 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_022146502.1 109 DAKRE 113 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MSSSKSPPSC YGSPCAACNY LRRKCFSDCV FAPHFPADDA EKFEIACRTY GASNIFKIFS 60 RLRHDERDEA AASLVYEAEA RRIDPVYGCV GFISILDDRL KRIQSDLVDA KRELSIYLGS 120 EASAAAASVS IPQFAAGSSS TTPEFLAQLP RLRAAPTRQS LNEQQLLVYS SQKSTIDNDI 180 RQSLRQESVD QPQEMPLVDN SKGFGSNEND QIQIQPHVQD QMCLIFESLS NR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-39	LBD family protein