PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022146537.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family HD-ZIP
Protein Properties Length: 847aa    MW: 92889.1 Da    PI: 6.4093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022146537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_022146537.1 18 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    6789*****************************************************97 PP
2START168.16.1e-531673742204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l v+ +g  g+++l+
  XP_022146537.1 167 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWYRDCRCLNVLSVVPTGngGTIELI 260
                     6899******************************************************.8999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf++ Ry+ +l++g++v++++S++s +  p     ss+vRae+lpSg+li+ +++g+s +++v+h+dl+ ++++++lr+l+
  XP_022146537.1 261 YMQTYAPTTLAAaRDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAgppPSSFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLY 355
                     ***************************************99988888899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++va+l++ +
  XP_022146537.1 356 ESSKILAQKMTVAALRHIR 374
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    
MALVMHKDSS NKQMDTSKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQSVNRKL SAMNKLLMEE NDRLQKQVSH LVYENGYMRQ  120
QLHSASGTTT DNSCESVVMS GQPQQQQNPN PQHPNRDVNN PAGLLAVAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRLSWYRDC  240
RCLNVLSVVP TGNGGTIELI YMQTYAPTTL AAARDFWTMR YTTSLEDGSL VVCERSLTSS  300
SGGPAGPPPS SFVRAEMLPS GYLIRACEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKI  360
LAQKMTVAAL RHIRQIAQET NGEIQHSGGR QPAVLRTFSQ KLCRGFNDAV NGFADDGWSP  420
LGSDGLEDVT IVINSSPNKF PGSQYNMSMY PSFGGGVMCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAHTVEHEE FLEVVRLEGL  540
AFSPEDVALA GRDMYLLQLC SGVDENAVGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD  600
PKTDEPTAAR TLDLASTLEV GANASRPAGE TDLSSYNLRS VLTIAFQFTF ENHMRDNVAA  660
MARQYVRSVV GSVQRVAMAI APSRLNSNMG LKPLPGSPEA LTLARWICRS YRIHIGAELL  720
QADSQSGDAM LKQLWHHSDA IMCCSVKTNA SAVFTFANQA GLDMLETTLV GLQDIMLDKI  780
LDEAGRKILC SEFPKIMQQG FANLPSGICV SSMGRPISYE QAVAWKVLND DGSNHCLAFM  840
FINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein